From Proteopedia

proteopedia linkproteopedia link

spinqualitylabelsall models 1nxu, resolution 1.80Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

CRYSTAL STRUCTURE OF E. COLI HYPOTHETICAL OXIDOREDUCTASE YIAK NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER82.

Overview

Escherichia coli YiaK catalyzes the reduction of 2,3-diketo-L-gulonate in, the presence of NADH. It belongs to a large family of oxidoreductases that, is conserved in archaea, bacteria, and eukaryotes but shows no sequence, homology to other proteins. We report here the crystal structures at up to, 2.0-A resolution of YiaK alone and in complex with NAD-tartrate. YiaK has, a new polypeptide backbone fold and a novel mode of recognizing the NAD, cofactor. In addition, NAD is bound in an unusual conformation, at the, interface of a dimer of the enzyme. The crystallographic analysis, unexpectedly revealed the binding of tartrate in the active site. Enzyme, kinetics studies confirm that tartrate and the related D-malate are, inhibitors of YiaK. In contrast to most other enzymes where substrate, binding produces a more closed conformation, the binding of NAD-tartrate, to YiaK produces a more open active site. The free enzyme conformation is, incompatible with NAD binding. His(44) is likely the catalytic residue of, the enzyme.

About this Structure

1NXU is a Single protein structure of sequence from Escherichia coli with SO4 as ligand. Full crystallographic information is available from OCA.

Reference

A novel NAD-binding protein revealed by the crystal structure of 2,3-diketo-L-gulonate reductase (YiaK)., Forouhar F, Lee I, Benach J, Kulkarni K, Xiao R, Acton TB, Montelione GT, Tong L, J Biol Chem. 2004 Mar 26;279(13):13148-55. Epub 2004 Jan 12. PMID:14718529

Page seeded by OCA on Tue Nov 20 22:38:48 2007