User:Adrian Aldrich/Prokaryotic Glutamine Synthetase Pfam Domains Outline
From Proteopedia
Prokaryotic Glutamine Synthetase Tertiary Structure: PFam domains
Prokaryotic Glutamine Synthetase is a dodecamer, comprised of 12 identical polypeptide chains, organized as a dimer of two disk like pentamers. Each protomer contains 2 Pfam domains, the Beta Grasp domain and the catalytic domain, preceded by meanders of a few resides in length which link the protomers together in the dodecamers core.
Beta Grasp domain
The beta grasp domain is the N-terminal domain, extending from residues 13-94. This domain is responsible for binding ATP, Glutamate, and Ammonia. ATP binds first, activating the site for binding glutamate. (need a more thorough description if possible.) <show protein alignment image> <show structures of the domain w and without ligands bound>
Catalytic domain
The catalytic domain is the C-terminal domain, extending from residues 101-382. (mechanism is not described, more research is necessary here)
<show alignment image> <show structures of the domain with and without ligands in viewer>
Active site
The dodecamer contains 12 active sites total, each formed from the Beta grasp domain of one protomer and the Catalytic domain of the neighboring protomer. <show relation between chains, domains, and active sites with viewer> -describe visually the important aspects of the active site, residues binding interactions etc..(havent generated the scenes yet) <show active site and ligands relationship, will need multiple scenes>
Replace the PDB id after the STRUCTURE_ and after PDB= to load and display another structure.
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| 1lgr, resolution 2.79Å () | |||||||||
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| Ligands: | , | ||||||||
| Activity: | Glutamate--ammonia ligase, with EC number 6.3.1.2 | ||||||||
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||
