1xnl

From Proteopedia

ASLV fusion peptide

Overview

The structure and membrane interaction of the internal fusion peptide, (IFP) fragment of the avian sarcoma and leucosis virus (ASLV) envelope, glycoprotein was studied by an array of biophysical methods. The peptide, was found to induce lipid mixing of vesicles more strongly than the fusion, peptide derived from the N-terminal fusion peptide of influenza virus, (HA2-FP). It was observed that the helical structure was enhanced in, association with the model membranes, particularly in the N-terminal, portion of the peptide. According to the infrared study, the peptide, inserted into the membrane in an oblique orientation, but less deeply than, the influenza HA2-FP. Analysis of NMR data in sodium dodecyl sulfate, micelle suspension revealed that Pro13 of the peptide was located near the, micelle-water interface. A type II beta-turn was deduced from NMR data for, the peptide in aqueous medium, demonstrating a conformational flexibility, of the IFP in analogy to the N-terminal FP such as that of gp41. A loose, and multimodal self-assembly was deduced from the rhodamine fluorescence, self-quenching experiments for the peptide bound to the membrane bilayer., Oligomerization of the peptide and its variants can also be observed in, the electrophoretic experiments, suggesting a property in common with, other N-terminal FP of class I fusion proteins.

About this Structure

1XNL is a Single protein structure of sequence from [1] with NH2 as ligand. Full crystallographic information is available from OCA.

Reference

Structure and membrane interaction of the internal fusion peptide of avian sarcoma leukosis virus., Cheng SF, Wu CW, Kantchev EA, Chang DK, Eur J Biochem. 2004 Dec;271(23-24):4725-36. PMID:15606759

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