User:Wayne Decatur/Generate Unfolded Structures
From Proteopedia
This describes how to unfold whole or parts of chains using Pymol.
Please note this will generate a structure that is just for representational purposes and is not thermodynamically stable. To translate or rotate a chain or parts relative the rest of the structure see [User:Wayne Decatur/Moving Components or Parts of Structures| my page on moving parts or components of structurs using Pymol].
Add information on breaking disulfides first and reforming others.
Pages with supporting information:
- Modeling and Editing Structures Page at Pymol Wiki
- Posting about using Sculpting in Pymol to manipulate structures
Add link to bottom part of my Morphhing page because might want to let Morphing server generate structures transitioning between the folded and modified states for making an animation.
