7c4x

From Proteopedia

Crystal structure of germination protease from the spore-forming bacterium Paenisporosarcina sp. TG-20 in its inactive form

Structural highlights

7c4x is a 2 chain structure with sequence from Paenisporosarcina sp.. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.5Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

In spore forming microbes, germination protease (GPR) plays a key role in the initiation of the germination process. A critical step during germination is the degradation of small acid-soluble proteins (SASPs), which protect spore DNA from external stresses (UV, heat, low temperature, etc.). Inactive zymogen GPR can be activated by autoprocessing of the N-terminal pro-sequence domain. Activated GPR initiates the degradation of SASPs; however, the detailed mechanisms underlying the activation, catalysis, regulation, and substrate recognition of GPR remain elusive. In this study, we determined the crystal structure of GPR from Paenisporosarcina sp. TG-20 (PaGPR) in its inactive form at a resolution of 2.5 A. Structural analysis showed that the active site of PaGPR is sterically occluded by an inhibitory loop region (residues 202-216). The N-terminal region interacts directly with the self-inhibitory loop region, suggesting that the removal of the N-terminal pro-sequence induces conformational changes, which lead to the release of the self-inhibitory loop region from the active site. In addition, comparative sequence and structural analyses revealed that PaGPR contains two highly conserved Asp residues (D123 and D182) in the active site, similar to the putative aspartic acid protease GPR from Bacillus megaterium. The catalytic domain structure of PaGPR also shares similarities with the sequentially non-homologous proteins HycI and HybD. HycI and HybD are metal-loproteases that also contain two Asp (or Glu) residues in their active site, playing a role in metal binding. In summary, our results provide useful insights into the activation process of PaGPR and its active conformation.

Structural insights into the psychrophilic germinal protease PaGPR and its autoinhibitory loop.,Lee CW, Lee S, Jeong CS, Hwang J, Chang JH, Choi IG, Kim TD, Park H, Kim HY, Lee JH J Microbiol. 2020 Sep;58(9):772-779. doi: 10.1007/s12275-020-0292-0. Epub 2020, Sep 1. PMID:32870483^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Lee CW, Lee S, Jeong CS, Hwang J, Chang JH, Choi IG, Kim TD, Park H, Kim HY, Lee JH. Structural insights into the psychrophilic germinal protease PaGPR and its autoinhibitory loop. J Microbiol. 2020 Sep;58(9):772-779. PMID:32870483 doi:10.1007/s12275-020-0292-0