User contributions
From Proteopedia
(Newest | Oldest) View (Newer 50) (Older 50) (20 | 50 | 100 | 250 | 500)
- 16:37, 9 June 2012 (hist) (diff) MolProbity (format)
- 16:35, 9 June 2012 (hist) (diff) MolProbity (more concise intro)
- 16:29, 9 June 2012 (hist) (diff) MolProbity (format, headings)
- 16:18, 9 June 2012 (hist) (diff) Image:MolProbity Logo 610x300 Wbkg.jpg (Logo of the MolProbity structure validation web service. Created by Ian W. Davis, original programmer of MolProbity.) (top)
- 16:17, 9 June 2012 (hist) (diff) MolProbity (added image)
- 14:57, 9 June 2012 (hist) (diff) m MolProbity
- 14:53, 9 June 2012 (hist) (diff) Image:Validation outlier legend.jpg (Key to graphical icons for validation outliers, as used in Molprobity.) (top)
- 14:51, 9 June 2012 (hist) (diff) MolProbity (more text, image)
- 14:05, 9 June 2012 (hist) (diff) MolProbity (started page)
- 13:45, 9 June 2012 (hist) (diff) Ramachandran Plot (fix ref)
- 13:37, 9 June 2012 (hist) (diff) Ramachandran Plot (→Plot regions limited by steric hindrance - format?)
- 13:33, 9 June 2012 (hist) (diff) Ramachandran Plot (→Plot regions limited by steric hindrance - added refs)
- 06:19, 9 June 2012 (hist) (diff) Ramachandran Plot (phi,psi order; 2 factual corrections; refs)
- 05:49, 9 June 2012 (hist) (diff) Ramachandran Plot (try change)
- 15:32, 8 June 2012 (hist) (diff) m Image:Ramachandran general-case data and contours T8000 small.jpg (→Summary) (top)
- 15:31, 8 June 2012 (hist) (diff) Ramachandran Plot (added images)
- 15:28, 8 June 2012 (hist) (diff) Image:Ramachandran Gly Pro data and contours T8000 small.jpg (Ramachandran plots (phi, psi backbone torsion angles) for glycine (left) and for trans proline (right). Datapoints from the "Top8000" crystal-structure chains with both resolution and MolProbity score <2.0, non-redundant at the PDB's 70% clusters, and ea) (top)
- 15:24, 8 June 2012 (hist) (diff) Image:Ramachandran general-case data and contours T8000 small.jpg (Ramachandran plot (phi, psi backbone torsion angles) for general-case amino acids - no Gly, Pro, prePro, Ile, or Val. Datapoints from the "Top8000" crystal-structure chains with both resolution and MolProbity score <2.0, non-redundant at the PDB's 70% cl)
- 10:48, 8 June 2012 (hist) (diff) m Ramachandran Plot (→Plot regions limited by steric hindrance)
- 10:47, 8 June 2012 (hist) (diff) Ramachandran Plot (→Glycine)
- 10:12, 8 June 2012 (hist) (diff) Ramachandran Plot (→Functionally relevant residues - minor rewrite)
- 10:06, 8 June 2012 (hist) (diff) Ramachandran Plot (→Plot regions limited by steric hindrance - Adding modern validation, image; fix order of phi,psi, etc)
- 21:35, 5 June 2012 (hist) (diff) Ramachandran Plot (added image, changed order to phi,psi, definition, etc)
- 21:26, 5 June 2012 (hist) (diff) Image:Ramachandran plot general 100K.jpg (→Summary) (top)
- 21:23, 5 June 2012 (hist) (diff) Image:Ramachandran plot general 100K.jpg (A general-case Ramachandran plot determined from 100,000 residues of high-quality crystallographic data (resolution ≥1.8A, backbone B-factor ≤30). Inner contour encloses the energetically favored 98% of that data, and outer contour encloses the allow)
- 20:48, 5 June 2012 (hist) (diff) m Hydrogen in macromolecular models
- 20:46, 5 June 2012 (hist) (diff) Hydrogen in macromolecular models (added image)
- 20:34, 5 June 2012 (hist) (diff) Image:Protein Hydrogens in electron Density 1yk4 Y13.jpg (Hydrogen atoms visualized in difference peaks for a protein structure at high resolution: 1yk4 Tyr 13.)
- 20:27, 5 June 2012 (hist) (diff) Staphylococcal nuclease (more text, refs)
- 18:31, 5 June 2012 (hist) (diff) Image:Staph nuclease 3h6m ribbon.jpg (Ribbon schematic of the Staphylococcal nuclease structure, with Ca++ and the thymidine diphosphate inhibitor. Produced in KiNG from PDB file 3h6m.) (top)
- 18:29, 5 June 2012 (hist) (diff) Staphylococcal nuclease (started page)
- 17:31, 5 June 2012 (hist) (diff) m Triose Phosphate Isomerase Structure & Mechanism
- 17:28, 5 June 2012 (hist) (diff) m Triose Phosphate Isomerase Structure & Mechanism
- 17:28, 5 June 2012 (hist) (diff) Triose Phosphate Isomerase Structure & Mechanism (added image)
- 17:12, 5 June 2012 (hist) (diff) CAP-Gly domain (added summary of current pdbs) (top)
- 16:19, 5 June 2012 (hist) (diff) CAP-Gly domain (minor rewording)
- 16:15, 5 June 2012 (hist) (diff) CAP-Gly domain (added info, ref)
- 15:39, 5 June 2012 (hist) (diff) CAP-Gly domain (better image)
- 15:34, 5 June 2012 (hist) (diff) Image:1tov rib GKNDG.jpg (CAP-Gly domain of 1tov, with GKNDG motif highlighted.) (top)
- 14:00, 5 June 2012 (hist) (diff) m CAP-Gly domain (→Structure)
- 13:57, 5 June 2012 (hist) (diff) CAP-Gly domain (function; rewrite)
- 13:18, 5 June 2012 (hist) (diff) CAP-Gly domain (starting new page for the molecule)
- 08:39, 5 June 2012 (hist) (diff) Triose Phosphate Isomerase (added image)
- 08:30, 5 June 2012 (hist) (diff) Image:TriosePhosphateIsomerase Ribbon pastel photo small.jpg (Ribbon drawing of the triose phosphate isomerase subunit (the "TIM barrel"), with the central 8 beta strands as green arrows and the surrounding 8 helices as brown spirals. Hand-drawn and colored (in pastels) by Jane Richardson around 1981.) (top)
- 10:25, 4 June 2012 (hist) (diff) Copper, Zinc Superoxide Dismutase (minor correction)
- 10:21, 4 June 2012 (hist) (diff) Image:2SOD ribbon colorPencil.jpg (Ribbon drawing of the bovine Cu,Zn superoxide dismutase subunit, with the metals shown as balls. Drawn and colored by Jane Richardson around 1981.) (top)
- 10:10, 4 June 2012 (hist) (diff) Copper, Zinc Superoxide Dismutase (added image)
- 09:45, 4 June 2012 (hist) (diff) Image:1xk8 trimer ribbon.jpg (Ribbon schematic of 1xk8 trimer. Created in KiNG.) (top)
- 12:28, 3 June 2012 (hist) (diff) Superoxide Dismutase (better refs)
- 06:42, 3 June 2012 (hist) (diff) Superoxide Dismutase (minor factual corrections)
(Newest | Oldest) View (Newer 50) (Older 50) (20 | 50 | 100 | 250 | 500)
