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Article title matches
- User:Schwarz Benjamin (265 bytes)
1: * Full Real Name:Benjamin Schwarz
5: ...tique et de biologie moleculaire et cellulaire (IGBMC)
9: * Field of Expertise or Study:structural bioinformatics - User:Benjamin Minor/Sandbox 1 (951 bytes)
5: === Bile Salt Transporter ===
6: ...e:Open_hydrophobicity_NEWEST.png|400 px|right|thumb|Figure 1. The coolest image of this protein EVAH!...
8: === HBV Receptor ===
16: ... to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456...
25: == Student Contributors == - User:Benjamin Trefilek (110 bytes)
1: Undergraduate Chemistry Major at Butler University.
2: In Dr. Jeremy Johnson's Biochem: Central Metabolism class. - Category:Benjamin, J.W (44 bytes)
1: List of pages with the keyword Benjamin, J.W - User:Benjamin T. Ledford (134 bytes)
1: Benjamin Ledford,
9: Biochemistry. - User:Benjamin Sandler (307 bytes)
1: * Full Real Name: Ben Sandler
5: * Institution (NO ABBREVIATIONS): Ashford University
9: ...Study: Lecture in general chemistry, physics, and biochemistry.
11: Taking workshop with Prilusky and Sussman at BCCE - User:Benjamin Minor (269 bytes)
1: * Full Real Name: Benjamin Minor
5: * Institution (NO ABBREVIATIONS): Butler University
9: * Field of Expertise or Study: Biochemistry
11: [[User: Benjamin Minor/Sandbox 1]] - Category:Benjamin, D C (44 bytes)
1: List of pages with the keyword Benjamin, D C - Category:Benjamin, B (42 bytes)
1: List of pages with the keyword Benjamin, B - Category:Benjamin, C (42 bytes)
1: List of pages with the keyword Benjamin, C - User:Benjamin Lair (287 bytes)
1: * Full Real Name: Benjamin Lair
5: * Institution (NO ABBREVIATIONS):Strasbourg University
7: * City, State/Province, Country: Strasbourg, Bas-Rhin, France
9: ...SBS (école supérieure de biotechnologie de Strasbourg) - User:Benjamin E. Nicholson (285 bytes)
2: Benjamin E. Nicholson
5: * Institution (NO ABBREVIATIONS):
10: Biochemistry
11: *[[User:Benjamin E. Nicholson/Sandbox 2]] - Category:Benjamin, D I (44 bytes)
1: List of pages with the keyword Benjamin, D I - User:Benjamin Wolff (228 bytes)
1: * Full Real Name: Benjamin Wolff
5: * Institution (NO ABBREVIATIONS): James Madison University
9: * Field of Expertise or Study: Biochemistry - Category:Benjamin SV (42 bytes)
1: List of pages with the keyword Benjamin SV - User:Benjamin Elliott/Crystal Structure of the Bromodomain-PHD Finger Module of Human Transcriptional Co-Activator CBP in complex with Acetylated Histone 4 Peptide (H4K20ac) (4,097 bytes)
2: ...t' caption='Generic view of BrD-PHD finger module bound to H4K20ac' scene=''>
3: ...anscriptional co-activator CREB-binding protein (CBP).
6: ...ers lysine-acetylated motifs comprising a hydrophobic or aromatic residue at -2 and a lysine or argin...
9: ...rations in the of the human CBP gene results have been implicated in hematological malignancies as we...
12: ... tag. Potential drug targets for BrDs include inhibitors to aid in rheumatoid arthritis<ref>DOI 10.10... - Category:Benjamin, S V (44 bytes)
1: List of pages with the keyword Benjamin, S V - User:Benjamin Elliott (417 bytes)
1: * Full Real Name: Benjamin Sidney Michel Elliott
5: * Institution (NO ABBREVIATIONS): Wabash College
9: * Field of Expertise or Study: Biochemistry
11: ...ger Module of Human Transcriptional Co-Activator CBP in complex with Acetylated Histone 4 Peptide (H4... - User:Benjamin Elliott/human transcriptional activator CBP (977 bytes)
1: ==Your Heading Here (maybe something like 'Structure')==
3: ...'. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
4: ...1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
14: ... to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456... - Category:Benjamin C (41 bytes)
1: List of pages with the keyword Benjamin C
Page text matches
- Hemoglobin (19,234 bytes)
1: ...c structure of HbII- oxy [[3P31]]" scene="Hemoglobinits/5" >
3: ...globin''' is an oxygen-transport protein. Hemoglobin is an allosteric protein. It is a <jmol>
5: <script> script /scripts/32/32/Subunits_1hho/1.spt;
6: center visible;</script>
9: ...lobin/4heme/3'>heme molecules</scene> give hemoglobin its red color. - 1le9 (6,222 bytes)
2: ...cture of a NF-kB heterodimer bound to the Ig/HIV-kB siti==
5: ...oteopedia.org/fgij/fg.htm?mol=1LE9 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1le9 ProSAT]</span></td></tr>
8: </table> - 1i9r (6,288 bytes)
2: ...OMPLEX WITH THE FAB FRAGMENT OF HUMANIZED 5C8 ANTIBODY==
5: ...oteopedia.org/fgij/fg.htm?mol=1I9R FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...d class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i9r ProSAT]</span></td></tr> - 1zom (5,646 bytes)
2: ...on Factor XI in complex with a peptidomimetic Inhibitor==
5: ...oteopedia.org/fgij/fg.htm?mol=1ZOM FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...-5-UREIDOPENTANAMIDE'>339</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zom ProSAT]</span></td></tr> - 1nsn (4,445 bytes)
2: ==THE CRYSTAL STRUCTURE OF ANTIBODY N10-STAPHYLOCOCCAL NUCLEASE COMPLEX AT 2.9 ANG...
5: ...oteopedia.org/fgij/fg.htm?mol=1NSN FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nsn ProSAT]</span></td></tr>
8: </table> - 4jam (4,145 bytes)
2: ... structure of broadly neutralizing anti-hiv-1 antibody ch103==
5: ...oteopedia.org/fgij/fg.htm?mol=4JAM FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...bligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jam ProSAT]</span></td></tr> - 1a9v (4,197 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=1A9V FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</t...
7: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a9v ProSAT]</span></td></tr>
8: </table>
14: <jmolCheckbox> - 1ktj (3,642 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=1KTJ FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ktj ProSAT]</span></td></tr>
8: </table>
14: <jmolCheckbox> - User:Schwarz Benjamin (265 bytes)
1: * Full Real Name:Benjamin Schwarz
5: ...tique et de biologie moleculaire et cellulaire (IGBMC)
9: * Field of Expertise or Study:structural bioinformatics - 4jan (4,445 bytes)
2: ==crystal structure of broadly neutralizing antibody CH103 in complex with HIV-1 gp120==
5: ...oteopedia.org/fgij/fg.htm?mol=4JAN FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...bligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td...
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jan ProSAT]</span></td></tr> - DNA (14,157 bytes)
1: {{BAMBED
4: |BAMBEDDOI=10.1002/bmb.20566
6: ...own as orange ribbon, and the planes of the nucleobases (drag down in the viewer to see them) in oran...
8: ... nearly all the living organisms. It contains the biological instructions for the development, surviv...
9: ... human genome contains nearly 3 · 10<sup>9</sup> bases with around 20,000 genes on 23 chromosomes. <... - 3ha6 (5,967 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=3HA6 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...AZINE-2,4,6-TRIAMINE'>2JZ</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ha6 ProSAT]</span></td></tr>
9: </table> - Sandbox 12345 (21,429 bytes)
1: ...) with bound O2 [[1gzx]]" scene="Hemoglobin/Foursubunits/5" >
3: ...lobin/4heme/3'>heme molecules</scene> give hemoglobin its red color.
5: ... group shows how the <scene name='Hemoglobin/Oxysubunitsf/4'>oxygenated heme group is held</scene> wi...
7: ...portions of the heme are buried among the hydrophobic amino acids of the protein.
9: ... hemoglobin variant is termed 'hemoglobin S' ([[2hbs]]). - 3ha8 (9,703 bytes)
2: ...OMPLEX STRUCTURE OF THE MAP KINASE P38/Compound 14b==
5: ...oteopedia.org/fgij/fg.htm?mol=3HA8 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ETHOXY-1,3,5-TRIAZIN-2-YL}-3-(2,2-DIMETHYL-4H-1,3-BENZODIOXIN-6-YL)-N-METHYL-L-ALANINAMIDE'>5JZ</scen...
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ha8 ProSAT]</span></td></tr> - User:Adithya Sagar/Workbench newDNA (17,226 bytes)
2: ...B-DNA' scene='User:Adithya_Sagar/Workbench_newDNA/B-dna/22' />
3: ... nearly all the living organisms. It contains the biological instructions for the development, surviv...
4: ...ation. The human genome contains nearly 3 billion bases with 20,000 genes on 23 chromosomes. <ref nam...
6: ...irections and are held together by hydrogen bonds between them. This structure helps the DNA in repli...
11: ...on='B-DNA' scene ='User:Adithya_Sagar/Sandbox_DNA/B-dna/4'/> - Sandbox 188 (321 bytes)
1: ...for use by the Chemistry 307 class at UNBC taught by Prof. [[User:Andrea Gorrell|Andrea Gorrell]].</t...
2: Benjamin Tan - User:Benjamin Minor/Sandbox 1 (951 bytes)
5: === Bile Salt Transporter ===
6: ...e:Open_hydrophobicity_NEWEST.png|400 px|right|thumb|Figure 1. The coolest image of this protein EVAH!...
8: === HBV Receptor ===
16: ... to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456...
25: == Student Contributors == - Sandbox423 (4,126 bytes)
1: '''This sandbox is in use for UMass Chemistry 423. Others pleas...
4: '''Understanding the chemical basis of disease and life processes'''
8: ...e) and edit this section to list your topic and pdb code.''
10: ...ing 2016]] -- notify Prof Thompson of any changes by email.'''
12: '''[[Sandbox Reserved 425|Team 1]]:''' Julie Boshar, - Student Projects for UMass Chemistry 423 Spring 2016 (14,869 bytes)
1: '''Understanding the chemical basis of disease and life processes'''
6: .... '''Optional Team or Teammate requests in Moodle by 1pm 2/1'''
7: ...will be assigned and posted in Moodle, to include both chemistry and chemical engineering majors on m...
8: :2. '''Topic and pdb code due in Moodle Friday 2/5 1pm.'''
9: ...d Proteopedia page for the same complex or same pdb code. - Sandbox89220 (13,515 bytes)
3: ===Background===
5: ...HAD superfamily protein[http://enzymefunction.org/bridging-projects/had-superfamily], which has the c...
11: ...ght' caption='Phosphomannose mutase 2' scene='Sandbox89220/2amy/12'/>
12: ...sphoryl group within its substrate, but it's possible that it might have the same machinery as the PG...
18: ..., thus participating in catalysis[http://chemhelp.bu.edu/groups/allengroup/projects/hadsf.html].
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