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- Category:Blank, I D (41 bytes)
1: List of pages with the keyword Blank, I D - Category:Blank, K (39 bytes)
1: List of pages with the keyword Blank, K - Image:Blank-white-30x460px.png (0 bytes)
- Category:Blank, P N (41 bytes)
1: List of pages with the keyword Blank, P N - Category:Blank PN (39 bytes)
1: List of pages with the keyword Blank PN - Category:Blank K (38 bytes)
1: List of pages with the keyword Blank K - Category:Blank ID (39 bytes)
1: List of pages with the keyword Blank ID - User:Jaime Prilusky/Test/Blank (230 bytes)
1: <StructureSection load='' size='340' side='right' caption='' scene=''>
Page text matches
- Help:Editing (24,612 bytes)
1: ...style='background:#ffd8d8;' cellpadding='6'><tr><td>
2: ..., the [[Proteopedia:Video Guide|Video Guides]], and the main [[Help]] Page.
3: </td></tr></table></center>
6: ...help reference dealing with wikitext, and Proteopedia uses the same wiki software.
9: ==Use Sandboxes for practice editing== - Scene authoring tools (23,035 bytes)
1: ...e Authoring Tools]], and watch the introductory videos, e.g. [https://youtu.be/P-LsB2U8rNM].
6: ...at includes these tags, but this page for example does not.
9: <!--<Structure load='
11: Insert PDB code or filename here' size='350' frame='true' align=...
12: ...ewed here: http://www.weizmann.ac.il/ISPC/Proteopedia.html. - 4gex (3,472 bytes)
2: ==Structure of a stabilised ceSAS-6 dimer, second crystal form==
3: <StructureSection load='4gex' size='340' side='right'caption='[[4gex]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GEX FirstGlance]. <br>
6: ...ffraction, [[Resolution|Resolution]] 2.8Å</td></tr>
7: ...ne name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> - 1ktr (4,589 bytes)
2: ...ment (scFv) in Complex with a Oligohistidine peptide==
3: <StructureSection load='1ktr' size='340' side='right'caption='[[1ktr]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KTR FirstGlance]. <br>
6: ...ffraction, [[Resolution|Resolution]] 2.7Å</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=1ktr ProSAT]</span></td></tr> - 8f1g (4,008 bytes)
2: ...al structure of human WDR5 in complex with compound WM662==
3: <StructureSection load='8f1g' size='340' side='right'caption='[[8f1g]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8F1G FirstGlance]. <br>
6: ...fraction, [[Resolution|Resolution]] 2.14Å</td></tr>
7: ...ino]propan-2-yl}oxy)propanoic+acid'>X8N</scene></td></tr> - Proteopedia:Problems (18,636 bytes)
1: ...e list desired new features on the page [[Proteopedia:Wishlist]]
3: ...add a note giving the date when it was fixed/solved.
7: ...for [[1au1]] was reseeded. The correction will gradually propagate to other pages.
9: ... problem to the latest PDB file remediation. Solved for these structures but there might be others
11: ...0, 13 April 2008 (IDT) This page appears to be in decent shape now. [[User:Eric Martz|Eric Martz]] 23... - Site (3,799 bytes)
1: ...Conservation, Evolutionary|evolutionarily conserved]], but are sometimes [[Conservation, Evolutionary...
4: ...reen links displays the full name of the site immediately below the molecule.
6: ==Identifying Residues in Sites==
7: ...n front of it, and has only blank background behind it.
10: ...e. Thus, the absence of green links for ''Sites'' does not mean that there are no functional sites. - User:Eric Martz/Sandbox 2 (1,499 bytes)
1: <!--{{STRUCTURE_2hhd | PDB=2hhd | SCENE= }}-->
2: ...size='350' frame='true' align='right' caption='2hhd' />
4: [[Image:2hhd_jmol_state_test.gif]]
6: ...as in use in Proteopedia when this page was created.
8: <scene name='Sandbox_Eric_Martz/Test_state_script/2'>Here is the sc... - 4g79 (3,507 bytes)
3: <StructureSection load='4g79' size='340' side='right'caption='[[4g79]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G79 FirstGlance]. <br>
6: ...ffraction, [[Resolution|Resolution]] 1.8Å</td></tr>
7: ...pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
8: ...rg/prosat/prosatexe?pdbcode=4g79 ProSAT]</span></td></tr> - Lac repressor (19,557 bytes)
2: <StructureSection load='' size='375' side='right' scene='Morphs/1osl_19_1l1m_9_morph/2' ca...
3: ...Morph]] of the '''lac repressor''' complexed with DNA
5: ...ial scene</scene>) After displaying interactive model: {{Template:Button Toggle Animation2}}
6: ...e-existing kink, is unknown. [[#Specific Binding| Details Below]].
10: ...ki/Bacteria bacteria]. Repressor proteins are coded for by ''regulatory'' genes. - User:Wayne Decatur/Sandbox (3,810 bytes)
1: ...' frame='true' align='right' caption='p19 complexed with siRNA' />
2: Here is a schematic illustration of the two strands of this silencing RNA (siRNA):<br>
9: ...ser:Wayne_Decatur/Sandbox/Test/3'>TextToBeDisplayed</scene>
12: [[Help:Protected_Pages|'''here''']] link with 3 quotes<br>
13: [[Help:Protected_Pages|''here'']] link with 2 quotes<br> - Molecular Playground/Authoring (19,935 bytes)
1: ...[http://molecularplayground.org MolecularPlayground.Org]).
3: ==Components of a Module for MP==
5: Each module in MP will ideally include the following components:
10: ...olecule''', optionally with animations, labels, and color keys.
13: ...ne with the invitation "More at MolecularPlayground.Org". - User:Mary Ball/Scenes (19,495 bytes)
1: {{STRUCTURE_1acj| PDB=1acj | SCENE= }}
6: ...se]] (''Tc''AChE) complexed with [http://en.wikipedia.org/wiki/Tacrine tacrine].
10: ...formation on creating and using scenes in Proteopedia pages, see the rest of this Tutorial.
16: ...eate the way things looked when the scene was saved.
18: ...oring tools'' can then be inserted into [[Proteopedia]] pages. - Help:Quiz (7,270 bytes)
1: Quizzes can be created in Proteopedia.
6: ...is possible; choices can be text or images or sounds)
7: * typed one-word answers ("fill in the blank"; optionally any one of multiple answers can be c...
9: ...epare students for conventional testing (see [[#Pedagogy]]).
13: ...Prilusky]] who installed the quizzer into Proteopedia. - 3mg0 (4,638 bytes)
3: <StructureSection load='3mg0' size='340' side='right'caption='[[3mg0]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MG0 FirstGlance]. <br>
6: ...fraction, [[Resolution|Resolution]] 2.68Å</td></tr>
7: ...-2-YLCARBONYL)-L-PHENYLALANINAMIDE'>BO2</scene></td></tr>
8: ...rg/prosat/prosatexe?pdbcode=3mg0 ProSAT]</span></td></tr> - 3mg4 (4,803 bytes)
2: ==Structure of yeast 20S proteasome with Compound 1==
3: <StructureSection load='3mg4' size='340' side='right'caption='[[3mg4]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MG4 FirstGlance]. <br>
6: ...fraction, [[Resolution|Resolution]] 3.11Å</td></tr>
7: ...ne name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> - 3mg6 (4,823 bytes)
2: ...ure of yeast 20S open-gate proteasome with Compound 6==
3: <StructureSection load='3mg6' size='340' side='right'caption='[[3mg6]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MG6 FirstGlance]. <br>
6: ...ffraction, [[Resolution|Resolution]] 2.6Å</td></tr>
7: ...ne name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> - 3mg7 (4,808 bytes)
2: ...ure of yeast 20S open-gate proteasome with Compound 8==
3: <StructureSection load='3mg7' size='340' side='right'caption='[[3mg7]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MG7 FirstGlance]. <br>
6: ...fraction, [[Resolution|Resolution]] 2.78Å</td></tr>
7: ...ne name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> - 3mg8 (4,810 bytes)
2: ...ure of yeast 20S open-gate proteasome with Compound 16==
3: <StructureSection load='3mg8' size='340' side='right'caption='[[3mg8]], [[Resolution|resolutio...
5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MG8 FirstGlance]. <br>
6: ...fraction, [[Resolution|Resolution]] 2.59Å</td></tr>
7: ...ne name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> - User:Jaime Prilusky/Links (7,849 bytes)
1: {{#tree:id=PDBTree|openlevels=0|close=top|open=top|
5: [[Believe_It_or_Not!]]
8: ***[[Book:Structural_Proteomics_and_its_Impact_on_the_Life_Sciences:6|Book:6]]
15: ...lusky/Test/3wu2]] Photosystem II complex (21 Ligands)
16: *** [[9n6k]] prot-dna, interesting structure
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