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1. Image:Ligand tunnel.png (0 bytes)
2. Image:Ligand overlay.pdb (0 bytes)
3. Category:Dansyl ligand (44 bytes)
   1: List of pages with the keyword Dansyl ligand
4. Image:Mutation with ligand.pdb (0 bytes)
5. Tumor necrosis factor ligand superfamily 3D structures (3,641 bytes)
   1: ==3D structures of tumor necrosis factor ligand superfamily==
   3: ...iption of the protein see [[Tumor necrosis factor ligand superfamily]]
   6: * Tumor necrosis factor ligand superfamily member 1 (Lymphotoxin-beta)
   10: * Tumor necrosis factor ligand superfamily member 2 see [[Tumor necrosis factor]...
   12: * Tumor necrosis factor ligand superfamily member 3 (Lymphotoxin-alpha)
6. Image:Ligand copy.pdb (0 bytes)
7. Image:Glycerol Ligand in Ferritin 3KX9.png (20 bytes)
8. Image:Ligand 3ljj ProteinPlus.png (205 bytes)
9. Ligand (2,978 bytes)
   1: ... substrate or inhibitor ligands. Avidin binds the ligand biotin.
   3: ...dia places beneath molecules under the category ''Ligands'' are based on a somewhat different definition, ...
   5: In macromolecular structure, ligand has a '''specialized and somewhat different meani...
   7: ... addition to moieties ordinarily considered to be ligand, such as metal ions and small organic compounds o...
   9: ...[Non-Standard Residues|non-standard residues]] as ligand, which avoid them being invisible in a backbone-o...
10. Category:Ligand binding (50 bytes)
    1: List of structures with the keyword Ligand binding
11. Category:Protein-ligand complex (58 bytes)
    1: List of structures with the keyword Protein-ligand complex
12. Category:Ligand-binding domain (52 bytes)
    1: List of pages with the keyword Ligand-binding domain
13. Category:Retinoid ligand complex (54 bytes)
    1: List of pages with the keyword Retinoid ligand complex
14. Category:Transcriptionally active conformation in absence of ligand (89 bytes)
    1: ...anscriptionally active conformation in absence of ligand
15. Category:Ligand-dependent (47 bytes)
    1: List of pages with the keyword Ligand-dependent
16. Category:Beta ligand substitution (55 bytes)
    1: List of pages with the keyword Beta ligand substitution
17. Category:Ligand binding protein (53 bytes)
    1: List of pages with the keyword Ligand binding protein
18. Category:Enzyme-ligand complex (52 bytes)
    1: List of pages with the keyword Enzyme-ligand complex
19. Category:Ligand (37 bytes)
    1: List of pages with the keyword Ligand
20. Category:Rna-ligand interaction (53 bytes)
    1: List of pages with the keyword Rna-ligand interaction

Page text matches

1. Help:Editing (24,612 bytes)
   133: {{Template:ColorKey Composition Ligand}}
   170: ...://www3.interscience.wiley.com/journal/113449000/abstract Biochem. Mol. Biol. Ed. 34:255-261] (2006). ...
   174: ...://www3.interscience.wiley.com/journal/113449000/abstract Biochem. Mol. Biol. Ed. 34:255-261]</nowiki>...
   193: &nbsp;<br>
2. Acetylcholinesterase (8,905 bytes)
   8: .../en.wikipedia.org/wiki/Substrate_(biochemistry) substrate] traffic, recognition and hydrolysis.<ref>PM...
   13: ...rtant in the [http://en.wikipedia.org/wiki/Ligand ligand] recognition <ref name="Raves">PMID:8989325</ref>...
3. Image:Pdb1kvl chain b.pdb (54 bytes)
   1: Chain B protein, ligand and waters from PDB entry 1KVL
4. Image:Pdb1kvl chain A.pdb (54 bytes)
   1: Chain B protein, ligand and waters from PDB entry 1KVL
5. Image:Pdb1kvl chain B.pdb (53 bytes)
   1: Chain B protein, ligand and water from PDB entry 1KVL
6. 3by5 (2,483 bytes)
   7: ...SE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
   8: ...=3by5 RCSB], [https://www.ebi.ac.uk/pdbsum/3by5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
7. Hemoglobin (19,396 bytes)
   9: ...le. Each of the subunits <scene name='Hemoglobin/Bbsubunitswithheme/5'>contains a heme</scene> prosthe...
   15: ... hemoglobin variant is termed 'hemoglobin S' ([[2hbs]]).
   18: ...elical sandwich structure vs the 3-on-3 of other Hbs<ref>PMID:11696555</ref> .
   24: ...e" versus the liganded "oxy" or "R state". The unliganded (deoxy) form is called the "T" (for "tense") st...
   30: ..., the proximal histidine (the tightest protein Fe ligand) is often called <scene name='32/32/Hisf9/1'>His ...
8. 1zk8 (2,708 bytes)
   7: ... class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
   8: ...=1zk8 RCSB], [https://www.ebi.ac.uk/pdbsum/1zk8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
9. 1zkd (2,724 bytes)
   7: ... class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
   8: ...=1zkd RCSB], [https://www.ebi.ac.uk/pdbsum/1zkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
10. Acetylcholine (3,078 bytes)
    12: .... For instance, a deficiency of acetylcholine is observed in Alzheimer's disease, which leads to memor...
    14: ...rtant in the [http://en.wikipedia.org/wiki/Ligand ligand] recognition. After this binding acetylcholineste...
11. NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol (8,927 bytes)
    6: ...ctor and is then released, allowing the quinone substrate to bind the enzyme and to be reduced. The NA...
    10: ...lime</b></font>. NQO1 residues, participating in ligand interactions, are shown as stick representation a...
    14: ...b></font> dimer ([[1d4a]], residues important for ligand interactions are <font color='blue'><b>colored bl...
    15: ...ne (2,3,5,6-tetramethyl-''p''-benzoquinone) are substrates of NQO1 (it catalyzes two-electron reductio...
12. Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
    15: ...as ligands for the second ion. Asp97 is a common ligand to both ions. What appears to be a phosphate ani...
    18: ...ar how this might modulate enzymatic activity. Subsequent mutagenesis studies (Arima ''et al.'', 2006...
    28: ...ramatsu and Ouchi, 1963; Nomoto et al., 1964). Subsequently Narahashi and Yanagita (1967) identified ...
    63: ...lytic enzyme of ''Streptomyces griseus'': VII. Substrate specificity of ''Streptomyces griseus'' prot...
    64: ...rahashi, Y., Ouchi, T., & Hiramatsu, A. (1964). Abstract, 6th Inern. Congr. Biochem., N.Y., '''4''', ...
13. 117e (5,307 bytes)
    7: ...N:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
    8: ...=117e RCSB], [https://www.ebi.ac.uk/pdbsum/117e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
    23: == Publication Abstract from PubMed ==
    24: ...tional studies measuring catalytic efficiency and ligand (metal ion, PPi and Pi) binding, provide strong e...
    26: ...Torkkel T, Hyytia T, Kapyla J, Lahti R, Cooperman BS, Goldman A J Mol Biol. 1998 Dec 18;284(5):1565-80...
14. 1dan (5,989 bytes)
    7: ...gand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene></td></tr>
    8: ...=1dan RCSB], [https://www.ebi.ac.uk/pdbsum/1dan PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
    25: == Publication Abstract from PubMed ==
15. 8gpb (5,904 bytes)
    7: ...OSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
    8: ...=8gpb RCSB], [https://www.ebi.ac.uk/pdbsum/8gpb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
    11: ...heir regulatory mechanisms and in their natural substrates. However, all known phosphorylases share ca...
    23: == Publication Abstract from PubMed ==
    24: ...a buried compared with AMP bound to T state GPb.(ABSTRACT TRUNCATED AT 400 WORDS)
16. 2src (9,009 bytes)
    7: ...CID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr>
    8: ...=2src RCSB], [https://www.ebi.ac.uk/pdbsum/2src PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
    13: ...DR2 on tyrosine residues, thereby promoting its subsequent autophosphorylation. Phosphorylates RUNX3 a...
    25: == Publication Abstract from PubMed ==
    26: ... of the regulatory domains, induced by SH2 or SH3 ligands, or by dephosphorylation of Tyr-527, could lead ...
17. Scene authoring tools (23,035 bytes)
    20: ...horing tools'' are as follows, with one or more tabs in the user interface for every step:
    28: [[Image:SAT_tabs.JPG|600px]]
    30: ...mostly done with the controls available via the tabs, while the right side of the user interface is a ...
    47: ...de water, include or exclude other hetero groups (ligands), load a specified biomolecule (biological unit)...
    56: [[Image:SAT controls outside of tabs.JPG|600px]]
18. 1m85 (2,936 bytes)
    5: ... and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1cae 1cae]. Full crystallographic informatio...
    7: ...T:S-DIOXYMETHIONINE'>OMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
    8: ...=1m85 RCSB], [https://www.ebi.ac.uk/pdbsum/1m85 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
19. 100d (3,251 bytes)
    7: ... class="sblockDat" id="ligandDat"><scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
    8: ...=100d RCSB], [https://www.ebi.ac.uk/pdbsum/100d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
    11: == Publication Abstract from PubMed ==
20. 101d (3,338 bytes)
    7: ...and=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NT:NETROPSIN'>NT</scene></td></tr>
    8: ...=101d RCSB], [https://www.ebi.ac.uk/pdbsum/101d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pd...
    11: == Publication Abstract from PubMed ==
    12: ... groove, provides no explanation for netropsin's observed A.T specificity, and is contradicted by NMR ...

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