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- Image:Coords.pdb (0 bytes)
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- Image:1BGY cdeopq fes4.pdb (186 bytes)
2: ...nds: Select :c,:d,:e,:o,:p,:q,fes 4; write COORDS PDB "1BGY_cdeopq fes4" - User:Wayne Decatur/3kg2 Morph Methods (7,469 bytes)
28: save test.pdb, all
49: ...drive, and then typed 'save_transformed all, test.pdb'<br>
50: ... I used the object ('save_transformed 3KG2a, test.pdb') and it did save it as a different orientation; ...
53: ... first frame even if you issue command 'save test.pdb, all'. Though I could do by commands such as' ro...
65: select all; write COORDS PDB "test.pdb" - User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods (11,869 bytes)
2: ... acid and C to chain 8 by using MagicFit in Swiss-PDB Viewer like described in the 3kg2 morph methods. ...
6: ... the A and B chain files to do fitting with SWISS-PDB VIEWER to get ligands back, and second set of lig...
8: ... Jmol icon in the corner and selecting view movie.pdb.gz from the menu and unzipped the file.
11: * Gzipped and Uploaded as [[Image:1ctsTO2cts.pdb.gz]]
12: ...at, gzipped, and uploaded as [[Image:CA1ctsTO2cts.pdb.gz]] . - User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods (10,499 bytes)
2: .../pdbgoodies/ PDB Goodies] for the protein. I knew PDB Goodies ignored and left out the heteroatoms so I...
4: ...to FASTA sequence obtained for each PDB file from PDBsum, differ quite a bit:
54: ...ig8. Got that result and called 3b8amodeledto1ig8.pdb
55: ...wissModel and told it to model it to 3b8aASchainA.pdb. This should renumber like it did when I submitte...
62: ...n I try to call it in Jmol. --> file = 1ig8TO3b8a.pdb. - User:Karsten Theis/Reviewing tools (8,481 bytes)
17: To quickly see which PDB files are shown on a page, and have quick access ...
24: coords = {}
120: if coordf not in coords:
121: coords[coordf] = t
122: print(f'\ncoords: https://proteopedia.org{coordf}{reload}')
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