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Article title matches

  1. Image:DALI 2.png (0 bytes)
  2. Image:DALI Figure.png (175 bytes)
    1: DALI Superimposition of PDB ID: 1ZBS chain A (blue and...
  3. Image:1fsz-1tub-dali.pdb.gz (116 bytes)
    1: ...med by Dali, http://ekhidna.biocenter.helsinki.fi/dali_server/start
  4. Image:1fsz-1tub-dali-abw.pdb.gz (245 bytes)
    1: ...by DaliLite, http://ekhidna.biocenter.helsinki.fi/dali_server/start -- chain A of 1tub renamed to chain ...
  5. Image:1fsz-1tub-dali-ab.pdb.gz (62 bytes)
    1: 1fsz:A aligned with 1tub:A by Dali. 1tub:A renamed to chain B.
  6. Image:DALI figure.pdf (12 bytes)
    1: Dali from IJ
  7. Image:DALI figure.png (0 bytes)
  8. Image:DALI screenshot.png (0 bytes)
  9. Category:Dali L (37 bytes)
    1: List of pages with the keyword Dali L
  10. Image:DALI-Alignment.png (0 bytes)
  11. Image:DALI alignment.png (118 bytes)
    2: DALI alignment of 1ZBS. 2ch5 is shown in the yellow/ o...
  12. Category:Dali, L (38 bytes)
    1: List of pages with the keyword Dali, L
  13. Category:Dali, H (38 bytes)
    1: List of pages with the keyword Dali, H
  14. Image:DALI screensho.png (15 bytes)
    1: DALI Screenshot
  15. Image:P30646 Dali Image.png (0 bytes)
  16. Image:Dali final image.png (0 bytes)
  17. Category:Dali H (37 bytes)
    1: List of pages with the keyword Dali H
  18. Image:Yale-7jx6-5a2f-homhom-preal-nomin-mod10-dali.pdb (0 bytes)
  19. Image:Dali 3.png (0 bytes)
  20. Image:Dali 4.png (0 bytes)

Page text matches

  1. Calculating GDT TS (7,056 bytes)
    21: ... the [http://ekhidna2.biocenter.helsinki.fi/dali/ DALI Server] in ''PDB 25'' mode, the top hit for struc...
  2. 1im7 (9,850 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  3. 1j8n (9,917 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  4. 1j8z (9,904 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  5. 1j9v (9,886 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  6. 1jaa (9,872 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  7. 1jar (9,728 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  8. 1jc8 (9,874 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  9. 1jcp (9,719 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BN ENV_HV1BN] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    28: [[Category: Dali H]]
  10. 1jd8 (10,057 bytes)
    11: [https://www.uniprot.org/uniprot/ENV_HV1BR ENV_HV1BR] The surface protein gp120 (SU) attaches the ...
    16: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    29: [[Category: Dali H]]
  11. 1jdk (3,757 bytes)
    14: ...ope gp41 glycoprotein.,Du AP, Limal D, Semetey V, Dali H, Jolivet M, Desgranges C, Cung MT, Briand JP, P...
    26: [[Category: Dali H]]
  12. Sandbox 323 (10,380 bytes)
    38: The Dali database [5] was used to determine the conserved ...
    82: ... proteins in databases such as BLAST, SPRITE, and DALI. The sequence matches gave information about the ...
    95: 5. http://ekhidna2.biocenter.helsinki.fi/dali/
  13. Sandbox326 (14,712 bytes)
    29: ...modeling strategies used such as Chimera, SPRITE, Dali, BLAST, InterPRO, and SwissDock allowed visualiza...
    46: ...amino acid side chains; was used instead of Dali (Dali didn’t analyze side chains); visualized results...
    50: ...ins rather than sequence similarities like BLAST. Dali is more limited than BLAST since it can only work...
    95: [[Image:Dali_4.png]]
    97: Figure 5: Results from 2QRU search in Dali and comparison to the full PDB. The first column ...
  14. Sandbox324 (9,292 bytes)
    3: ...boratory experiments. Online tools such as BLAST, Dali, SPRITE, and InterPro often matched 4DIU with car...
    19: ...esterase family. The SPRITE, BLAST, InterPro, and Dali Search along with other bioinformatics analyses c...
    56: ... the bioinformatic predictions of Chimera, BLAST, Dali, and Sprite.<ref>PMID:21638687</ref>
  15. Image:3.png (229 bytes)
    1: ...e with a medium confidence level to EC: 2.7.1.85. Dali says that the percent match biased on protein str...
  16. Image:4.png (214 bytes)
    1: ...tware with a low confidence level to EC:2.7.1.59. Dali gives the percent match biased on protein structu...
  17. 1uf9 (4,424 bytes)
    24: ... the P-loop motif. A structure homology search by DALI revealed the similarity of the DCKs from T. therm...
  18. 1v2b (4,040 bytes)
    24: ...ar to PsbP. A structural homology search with the DALI algorithm indicated that the folding of PsbP is v...
  19. 1xhh (4,635 bytes)
    23: ...al comparison based on distance matrix alignment (DALI), class architecture topology and homologous supe...
  20. 1ye8 (4,884 bytes)
    24: ...The closest structural homologue as determined by DALI is the RecA family. In contrast to the latter pro...

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