Search results

From Proteopedia

proteopedia linkproteopedia link

There is no page with the exact title "Final.casp.pdb". The search results for "Final.casp.pdb" are displayed below. You can create a page titled Final.casp.pdb (by clicking on the red link).

For more information about searching Proteopedia, see Help.

Showing below 5 results starting with #1.

View (previous 20) (next 20) (20 | 50 | 100 | 250 | 500)

Article title matches

1. Image:Final.casp.pdb (0 bytes)
2. Image:Final.casp (2).pdb (117 bytes)
   2: PDB of STK11 found through Phyre2

Page text matches

1. Calculating GDT TS (7,061 bytes)
   2: ...feels-like-ones-child-has-left-home/ AlphaFold2 @ CASP14: “It feels like one’s child has left home....
   4: ...eoretical models]] and [[AlphaFold2 examples from CASP 14]].
   21: ...na2.biocenter.helsinki.fi/dali/ DALI Server] in ''PDB 25'' mode, the top hit for structural similarity ...
   27: :(Without this, LGA defaults to 5.0 Å, but CASP uses 4.0.)
   56: ...tructure, namely 104 residues in our example. The final GDT_TS score for structure similarity between 5a2...
2. Theoretical models (23,954 bytes)
   2: ... their amino acid sequences. See [[#2020: CASP 14|CASP 14]]. For the AlphaFold database of predictions, ...
   10: ...the [[Protein Data Bank]] but [http://www.pdb.org/pdb/static.do?p=download/theoretical_models/index.htm...
   34: ...ed model may not yet have been deposited in the [[PDB]]. In such cases, it may be worthwhile to contact...
   50: ===CASP===
   51: ... included<ref>PMID: 19774619</ref>. Assessment of CASP results is done in a '''double-blind''' manner: t...
3. How to predict structures with AlphaFold (18,526 bytes)
   1: ...te in the [[Theoretical_models#2022:_CASP_15|2022 CASP 15 competition]]. In 2024, the AlphaFold team won...
   11: ...tglance.jmol.org/where.htm#uploading Upload] your PDB file. FirstGlance has numerous [http://firstglanc...
   20: ...utomatically), see [[Converting AlphaFold3 CIF to PDB]].
   22: ...n ID assignments differ from those of empirical wwPDB files: see [[Chains_and_Chain_IDs#AlphaFold3_Chai...
   56: ...ol.org/where.htm#uploading Upload] your predicted PDB file to [http://firstglance.jmol.org FirstGlance....

View (previous 20) (next 20) (20 | 50 | 100 | 250 | 500)

Search in namespaces:
(Main) Talk User User talk Proteopedia Proteopedia talk Image Image talk MediaWiki MediaWiki talk Template Template talk Help Help talk Category Category talk Journal Journal talk Tutorial Tutorial talk Group Group talk Studio Studio talk Book Book talk Mutation Mutation talk Art Art talk BASIL BASIL talk
List redirects
Search for