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Article title matches
- Image:2QRU(green)2LPR(yellow).png (48 bytes)
1: 2QRU active site alignment with 2LPR. RMSD: 1.17 - Image:2QRU(green)2YH2D(orange)DALI.png (54 bytes)
1: Overlap of 2QRU (green) and 2YH2D (orange) using DALI. - Category:Green O (38 bytes)
1: List of pages with the keyword Green O - Category:Green, S.R (41 bytes)
1: List of pages with the keyword Green, S.R - Category:Green JR (39 bytes)
1: List of pages with the keyword Green JR - Category:Green turtle egg white ribonuclease (66 bytes)
1: List of pages with the keyword Green turtle egg white ribonuclease - Category:Green NC (39 bytes)
1: List of pages with the keyword Green NC - Category:Green J (38 bytes)
1: List of pages with the keyword Green J - Category:Tobacco mild green mosaic virus (62 bytes)
1: List of pages with the keyword Tobacco mild green mosaic virus - Category:Green RM (39 bytes)
1: List of pages with the keyword Green RM - Category:Blue/green light-absorbing (57 bytes)
1: ...f pages with the keyword Blue/green light-absorbing - Category:Green MJ (39 bytes)
1: List of pages with the keyword Green MJ - Category:Green NM (39 bytes)
1: List of pages with the keyword Green NM - Green Fluorescent Protein (25,362 bytes)
1: ..._Fluorescent_Protein/1ema_gfp_default/2' caption='Green fluorescent protein complex with peptide-derived ...
3: ...zation, protein mobility, intracellular trafficking, and interactions between various membrane and cy...
4: * '''Superfolder GFP''' does not misfold when fused to other protein...
5: ...tein''' changes the emission when exposed to UV light<ref>PMID:32242924</ref>.
8: ...] and [http://en.wikipedia.org/wiki/Roger_Tsien Roger Tsien].</ref><br /> - Category:Green alga (41 bytes)
1: List of pages with the keyword Green alga - Category:Green fluorescent protein (56 bytes)
1: List of pages with the keyword Green fluorescent protein - Category:Fluorophore green fluorescent protein (68 bytes)
1: List of pages with the keyword Fluorophore green fluorescent protein - Category:Green haem binding protein (57 bytes)
1: List of pages with the keyword Green haem binding protein - Category:Green tea (40 bytes)
1: List of pages with the keyword Green tea - Category:Malachite green (46 bytes)
1: List of pages with the keyword Malachite green
Page text matches
- Sandbox Dav 14 (1,103 bytes)
1: ...because it can be used to tag otherwise invisible gene products of interest and thus observe their ex...
3: == Exploring the Structure ==
5: ...a' size='300' frame='true' align='right' caption='GFP' />
8: ...ring via a new bond between the threonine and the glycine residues. - Sandbox dav 4 (1,378 bytes)
1: ...because it can be used to tag otherwise invisible gene products of interest and thus observe their ex...
4: == Exploring the Structure ==
5: ...' size='300' frame='true' align='center' caption='gfp' />
6: ...f 238 amino acids. The <scene name='Sandbox_dav_4/Gfp/1'>chormophore</scene>
7: ...hrough the barrel. The <scene name='Sandbox_dav_4/Gfp/1'>chromophore</scene> - Help:Editing (24,612 bytes)
1: ...nter><table style='background:#ffd8d8;' cellpadding='6'><tr><td>
2: ...deo Guide|Video Guides]], and the main [[Help]] Page.
5: ==<big>Help with Wikitext Syntax</big>==
6: ...ey have a much more complete help reference dealing with wikitext, and Proteopedia uses the same wiki...
9: ==Use Sandboxes for practice editing== - Hemoglobin (19,396 bytes)
1: ...en and yellow) with bound O2 [[1gzx]]" scene="Hemoglobin/Foursubunits/5" >
3: ...emoglobin''' is an oxygen-transport protein. Hemoglobin is an allosteric protein. It is a <jmol>
9: ...moglobin/4heme/3'>heme molecules</scene> give hemoglobin its red color.
11: ... name='Hemoglobin/Oxysubunitsf/4'>oxygenated heme group is held</scene> within the polypeptide.
13: ...e hydrophobic portions of the heme are buried among the hydrophobic amino acids of the protein. - Ann Taylor/Hemoglobin (7,712 bytes)
1: ...ellow) with bound O2 [[1gzx]]" scene="Hemoglobin/1gzx/2" >
2: ...moglobin/4heme/3'>heme molecules</scene> give hemoglobin its red color.
4: ...on changes spin state, resulting in the iron moving <scene name='57/576710/Oxy_fe_planarity/3'>into t...
6: ...ergoes some but not all of these changes, depending on conditions. <jmol><jmolButton>
7: <script>if (_animating); anim pause;set echo bottom left; color echo whi... - Help:Contents (6,518 bytes)
2: ...he directory of help pages for visitors and for registered users.
8: ===<i class="fas fa-directions"></i> Navigating Proteopedia===
9: ...ft. Entries have links to other entries (if you right-click them, the current entry will stay availab...
11: |valign="top" |
13: ...=<i class="fas fa-glasses"></i> Reading and viewing entries=== - Proteopedia:About (7,060 bytes)
5: ...y, Unique Capabilities, Types of Contents, and Usage Statistics. More details follow below.
8: ...ze and disseminate structural & functional knowledge about biomacromolecules, their assemblies and in...
10: ==Goals for Proteopedia==
12: ...f tying text to three-dimensional, interactive images.
16: * To develop new '''[[Teaching strategies using Proteopedia]]'''. - Scene authoring tools (23,035 bytes)
1: ...ing Tools]], and watch the introductory videos, e.g. [https://youtu.be/P-LsB2U8rNM].
3: ==Where are the ''Scene authoring tools''?==
4: [[Image:SAT show.JPG|350px]]
6: ...lder content that includes these tags, but this page for example does not.
11: ...r filename here' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert op... - 1pcs (5,219 bytes)
3: ...ion='[[1pcs]], [[Resolution|resolution]] 2.15Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=1PCS FirstGlance]. <br>
7: ...lass="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
8: ...c.uk/pdbsum/1pcs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pcs ProSAT]</span></td>... - 2jad (5,491 bytes)
2: ==Yellow fluorescent protein - glutaredoxin fusion protein==
3: ...ion='[[2jad]], [[Resolution|resolution]] 2.70Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=2JAD FirstGlance]. <br>
7: ...-1-YL]ACETIC+ACID'>PIA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> - 1gk2 (3,815 bytes)
2: ==Histidine Ammonia-Lyase (HAL) Mutant F329G from Pseudomonas putida==
3: ...ion='[[1gk2]], [[Resolution|resolution]] 1.90Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=1GK2 FirstGlance]. <br>
7: ...gand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> - 1gk8 (4,712 bytes)
3: ...ion='[[1gk8]], [[Resolution|resolution]] 1.40Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=1GK8 FirstGlance]. <br>
7: ...METHYL+METHIONINE'>MME</scene>, <scene name='pdbligand=SMC:S-METHYLCYSTEINE'>SMC</scene></td></tr>
8: ...ttps://prosat.h-its.org/prosat/prosatexe?pdbcode=1gk8 ProSAT]</span></td></tr> - 4hnj (3,793 bytes)
2: ==Crystallographic structure of BCL-xL domain-swapped dimer in...
3: ...ion='[[4hnj]], [[Resolution|resolution]] 2.90Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=4HNJ FirstGlance]. <br>
7: ...c.uk/pdbsum/4hnj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hnj ProSAT]</span></td>... - 9mza (4,581 bytes)
3: ...ion='[[9mza]], [[Resolution|resolution]] 2.10Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=9MZA FirstGlance]. <br>
7: ...lass="sblockDat" id="ligandDat"><scene name='pdbligand=A1BUC:1-{1-[5-({1-[5-chloro-4-({8-methoxy-1-me...
8: ...c.uk/pdbsum/9mza PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9mza ProSAT]</span></td>... - 9dc0 (1,526 bytes)
3: ...ion='[[9dc0]], [[Resolution|resolution]] 1.91Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=9DC0 FirstGlance]. <br>
7: ...c.uk/pdbsum/9dc0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9dc0 ProSAT]</span></td>...
10: [https://www.uniprot.org/uniprot/A0A142D842_ERIRU A0A142D842_ERIRU] - 1uw9 (5,558 bytes)
3: ...ion='[[1uw9]], [[Resolution|resolution]] 2.05Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=1UW9 FirstGlance]. <br>
7: ...d=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SMC:S-METHYLCYSTEINE'>SMC</scene></td></tr>
8: ...c.uk/pdbsum/1uw9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uw9 ProSAT]</span></td>... - 1uwa (5,556 bytes)
3: ...ion='[[1uwa]], [[Resolution|resolution]] 2.30Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=1UWA FirstGlance]. <br>
7: ...d=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SMC:S-METHYLCYSTEINE'>SMC</scene></td></tr>
8: ...c.uk/pdbsum/1uwa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uwa ProSAT]</span></td>... - 2bwd (4,579 bytes)
2: ...bacter cycloclastes Cu Nitrite Reductase with Endogenously bound Nitrite and NO==
3: ...ion='[[2bwd]], [[Resolution|resolution]] 1.15Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=2BWD FirstGlance]. <br>
7: ...=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr> - 2bw4 (4,506 bytes)
2: ==Atomic Resolution Structure of Resting State of the Achromobacter cycloclastes Cu Nitrit...
3: ...ion='[[2bw4]], [[Resolution|resolution]] 0.90Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=2BW4 FirstGlance]. <br>
7: ...=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> - 2bw5 (4,551 bytes)
3: ...ion='[[2bw5]], [[Resolution|resolution]] 1.12Å' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=2BW5 FirstGlance]. <br>
7: ...=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
8: ...c.uk/pdbsum/2bw5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bw5 ProSAT]</span></td>...
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