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1. User:Ignacio Ibarra Del Río/Workbench/Structural analysis of DNA structures (4,313 bytes)
   1: ...o Ibarra's Workbench, visit [[User:Ignacio_Ibarra_Del_Río/Workbench/Contents|contents]] for a list o...
   4: = '''Structural analysis of free DNA duplexes''' =
   6: ... are shown checking at the available data in the PDB.
   9: All extracted PDB structures were downloaded from two sources:
   11: ...P server, and are represented with their PDB ID code.
2. User:Ignacio Ibarra Del Río (250 bytes)
   1: * Full Real Name: Ignacio Ibarra Del Río
   3: * Position: Undergraduate student
   5: ... ABBREVIATIONS): Pontificia Universidad Católica de Chile
   9: * Field of Expertise or Study: Bioinformatics
3. User:Ignacio Ibarra Del Río/Workbench (844 bytes)
   1: Welcome to Ignacio Ibarra's Workbench!
   3: ...elated with the Comparative modelling of free DNA duplex structures.
   5: ...ctures|Analysis of DNA structures and DNA set building]]
   6: ...testing|Testing free DNA structures comparative modelling]]
   10: ...ationship between sequences and structures in DNA duplex structures? '''
4. User:Ignacio Ibarra Del Río/Workbench/Comparative modelling testing (1,770 bytes)
   3: === Preparing the modelling structure files ===
   5: ...e rescued, and the rest of the bases were discarded.
   7: ...' size='300' frame='true' align='right' caption='1d31 after cutting' />
   8: ...' size='300' frame='true' align='right' caption='1d31 before cutting' />
   10: ...ied in the same way, and the id codes are reflected below:
5. User:Ignacio Ibarra Del Río/Workbench/Contents (301 bytes)
   1: ...lated with the Comparative modelling of free DNA duplex structures.
   3: ...ctures|Analysis of DNA structures and DNA set building]]
6. Category:Ibarra KD (40 bytes)
   1: List of pages with the keyword Ibarra KD
7. Category:Ibarra-Soza JM (45 bytes)
   1: List of pages with the keyword Ibarra-Soza JM
8. Category:Ibarra-Molero, B (47 bytes)
   1: List of pages with the keyword Ibarra-Molero, B
9. Category:Ibarra, B (40 bytes)
   1: List of pages with the keyword Ibarra, B
10. Category:Ibarra, C (40 bytes)
    1: List of pages with the keyword Ibarra, C
11. Category:Ibarra, K D (42 bytes)
    1: List of pages with the keyword Ibarra, K D
12. Category:Ibarra-Soza, J M (47 bytes)
    1: List of pages with the keyword Ibarra-Soza, J M
13. Category:Flores-Ibarra, A (47 bytes)
    1: List of pages with the keyword Flores-Ibarra, A
14. Category:Ibarra C (39 bytes)
    1: List of pages with the keyword Ibarra C
15. Category:Ibarra B (39 bytes)
    1: List of pages with the keyword Ibarra B
16. Category:Flores-Ibarra A (46 bytes)
    1: List of pages with the keyword Flores-Ibarra A
17. Category:Ibarra-Molero B (46 bytes)
    1: List of pages with the keyword Ibarra-Molero B

Page text matches

1. User:Ignacio Ibarra Del Río/Workbench/Structural analysis of DNA structures (4,313 bytes)
   1: ...o Ibarra's Workbench, visit [[User:Ignacio_Ibarra_Del_Río/Workbench/Contents|contents]] for a list o...
   4: = '''Structural analysis of free DNA duplexes''' =
   6: ... are shown checking at the available data in the PDB.
   9: All extracted PDB structures were downloaded from two sources:
   11: ...P server, and are represented with their PDB ID code.
2. 2ynx (3,179 bytes)
   2: ... Common Ancestor (LACA) from the Precambrian Period==
   3: <StructureSection load='2ynx' size='340' side='right'caption='[[2ynx]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YNX FirstGlance]. <br>
   6: ...raction, [[Resolution|Resolution]] 1.749&#8491;</td></tr>
   7: ...scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
3. 2yn1 (3,149 bytes)
   2: ...Common Ancestor (LGPCA) from the Precambrian Period==
   3: <StructureSection load='2yn1' size='340' side='right'caption='[[2yn1]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YN1 FirstGlance]. <br>
   6: ...ffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
   7: ...='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
4. 1k3l (4,659 bytes)
   3: <StructureSection load='1k3l' size='340' side='right'caption='[[1k3l]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K3L FirstGlance]. <br>
   6: ...ffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
   7: ...='pdbligand=GTX:S-HEXYLGLUTATHIONE'>GTX</scene></td></tr>
   8: ...rg/prosat/prosatexe?pdbcode=1k3l ProSAT]</span></td></tr>
5. 1k3o (4,431 bytes)
   3: <StructureSection load='1k3o' size='340' side='right'caption='[[1k3o]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K3O FirstGlance]. <br>
   6: ...ffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
   7: ...rg/prosat/prosatexe?pdbcode=1k3o ProSAT]</span></td></tr>
   10: ... and endogenous hydrophobic electrophiles.<ref>PMID:20606271</ref>
6. 1k3y (4,711 bytes)
   2: ...utathione S-transferase with S-hexyl glutatione and glycerol at 1.3 Angstrom==
   3: <StructureSection load='1k3y' size='340' side='right'caption='[[1k3y]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K3Y FirstGlance]. <br>
   6: ...ffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
   7: ...='pdbligand=GTX:S-HEXYLGLUTATHIONE'>GTX</scene></td></tr>
7. 2yoi (3,285 bytes)
   2: ... Common Ancestor (LECA) from the Precambrian Period==
   3: <StructureSection load='2yoi' size='340' side='right'caption='[[2yoi]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YOI FirstGlance]. <br>
   6: ...ffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
   7: ...scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
8. 2ypm (2,971 bytes)
   2: ...Common Ancestor (LAFCA) from the Precambrian Period==
   3: <StructureSection load='2ypm' size='340' side='right'caption='[[2ypm]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YPM FirstGlance]. <br>
   6: ...raction, [[Resolution|Resolution]] 2.199&#8491;</td></tr>
   7: ...rg/prosat/prosatexe?pdbcode=2ypm ProSAT]</span></td></tr>
9. 1ev4 (2,785 bytes)
   2: ...TRANSFERASE A1-1: MUTANT W21F/F220Y WITH GSO3 BOUND==
   3: <StructureSection load='1ev4' size='340' side='right'caption='[[1ev4]], [[Resolution|resolutio...
   5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EV4 FirstGlance]. <br>
   6: ...ffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
   7: ...ne name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
10. 1ev9 (2,778 bytes)
    2: ...IONE S-TRANSFERASE A1-1 MUTANT W21F WITH GSO3 BOUND==
    3: <StructureSection load='1ev9' size='340' side='right'caption='[[1ev9]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EV9 FirstGlance]. <br>
    6: ...ffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
    7: ...ne name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
11. 1h5w (4,264 bytes)
    3: <StructureSection load='1h5w' size='340' side='right'caption='[[1h5w]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H5W FirstGlance]. <br>
    6: ...ffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
    7: ...=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
    8: ...rg/prosat/prosatexe?pdbcode=1h5w ProSAT]</span></td></tr>
12. User:Ignacio Ibarra Del Río (250 bytes)
    1: * Full Real Name: Ignacio Ibarra Del Río
    3: * Position: Undergraduate student
    5: ... ABBREVIATIONS): Pontificia Universidad Católica de Chile
    9: * Field of Expertise or Study: Bioinformatics
13. User:Ignacio Ibarra Del Río/Workbench (844 bytes)
    1: Welcome to Ignacio Ibarra's Workbench!
    3: ...elated with the Comparative modelling of free DNA duplex structures.
    5: ...ctures|Analysis of DNA structures and DNA set building]]
    6: ...testing|Testing free DNA structures comparative modelling]]
    10: ...ationship between sequences and structures in DNA duplex structures? '''
14. 3ziv (2,972 bytes)
    2: ... Common Ancestor (AECA) from the Precambrian Period==
    3: <StructureSection load='3ziv' size='340' side='right'caption='[[3ziv]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZIV FirstGlance]. <br>
    6: ...fraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
    7: ...rg/prosat/prosatexe?pdbcode=3ziv ProSAT]</span></td></tr>
15. 1zzy (2,479 bytes)
    2: ==Crystal Structure of Thioredoxin Mutant L7V==
    3: <StructureSection load='1zzy' size='340' side='right'caption='[[1zzy]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZZY FirstGlance]. <br>
    6: ...ffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
    7: ...rg/prosat/prosatexe?pdbcode=1zzy ProSAT]</span></td></tr>
16. 2fch (2,666 bytes)
    2: ==Crystal Structure of Thioredoxin Mutant G74S==
    3: <StructureSection load='2fch' size='340' side='right'caption='[[2fch]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FCH FirstGlance]. <br>
    6: ...ffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
    7: ...=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
17. 2fd3 (2,481 bytes)
    2: ==Crystal Structure of Thioredoxin Mutant P34H==
    3: ...n load='2fd3' size='340' side='right'caption='[[2fd3]], [[Resolution|resolution]] 2.45&Aring;' scene=...
    5: ...b> use [https://proteopedia.org/fgij/fg.htm?mol=2FD3 FirstGlance]. <br>
    6: ...fraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
    7: ...rg/prosat/prosatexe?pdbcode=2fd3 ProSAT]</span></td></tr>
18. 2h6x (2,692 bytes)
    2: ==Crystal Structure of Thioredoxin Wild Type in Hexagonal (p61) Space Group==
    3: <StructureSection load='2h6x' size='340' side='right'caption='[[2h6x]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H6X FirstGlance]. <br>
    6: ...ffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
    7: ...=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
19. 2h6z (4,627 bytes)
    2: ==Crystal Structure of Thioredoxin Mutant E44D in Hexagonal (p61) Space Group==
    3: <StructureSection load='2h6z' size='340' side='right'caption='[[2h6z]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H6Z FirstGlance]. <br>
    6: ...fraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
    7: ...=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
20. 2h70 (4,625 bytes)
    2: ==Crystal Structure of Thioredoxin Mutant D9E in Hexagonal (p61) Space Group==
    3: <StructureSection load='2h70' size='340' side='right'caption='[[2h70]], [[Resolution|resolutio...
    5: ...the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H70 FirstGlance]. <br>
    6: ...ffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
    7: ...=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>

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