This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Search results
From Proteopedia
You searched for JBSD:4
There is no page with the exact title "JBSD:4". The search results for "JBSD:4" are displayed below. You can create a page titled JBSD:4 (by clicking on the red link).
For more information about searching Proteopedia, see Help.
To exclude pages titled with 4-character PDB codes, use the checkbox "only Human created pages" at the bottom of this page.
Showing below up to 20 results starting with #1.
View (previous 20) (next 20) (20 | 50 | 100 | 250 | 500)
Article title matches
- Journal:JBSD:37 (2,469 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:37/Cv/2' caption=''>
6: ...ed interaction of <scene name='Journal:JBSD:37/Cv/4'>Piscidin-1 peptide</scene> (<span style="color:l... - Journal:JBSD:9 (4,221 bytes)
1: ... size='450' side='right' scene='Journal:JBSD:9/Cv/4' caption=''>
6: ...">active site residues: His70, His72, His95, His104, His113, Asp 116 and His 151 are in cyan</span>, ... - Journal:JBSD:40 (3,640 bytes)
1: ...ad='' size='450' side='right' scene='Journal:JBSD:40/Cv/1' caption=''>
3: ...-Chian Chen</big> <ref>doi 10.1080/07391102.2012.745168</ref>
6: ...in this study, and the IN-LEDGF structure PDB [[2b4j]] was to search for ligands from traditional Chi...
7: ...kground-color:black;font-weight:bold;">Relaxed α-helices are colored in yellow</span>. - Journal:JBSD:23 (1,976 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:23/Cv/1' caption=''>
3: ...utao Song</big> <ref>doi 10.1080/07391102.2012.721498</ref> - Journal:JBSD:16 (5,765 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:16/Cv/1' caption=''>
6: ...SD:16/Cv/2'>nAChR</scene>, PDB code [[2bg9]]), γ-aminobutyric acid and glycine. 5-HT3-R is invol...
7: ...cterised experimentally. The <scene name='Journal:JBSD:16/Cv/6'>ligand binding site</scene> of nAChR is ...
9: ...e> in a still debated arrangement.<ref>PMID:20724042 </ref> Subunits <font color='magenta'><b>A</b></...
10: ...ion by more than 2 kcal/mol. <scene name='Journal:JBSD:16/Cv/17'>Click here to see also the interface of... - Journal:JBSD:20 (4,397 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:20/Cv/1' caption=''>
3: ...Bouraoui </big> <ref>doi 10.1080/07391102.2012.721495</ref>
7: ...ices α1, α6, α9 and the β7-α8 loop. In TPMT structure, it has been described...
8: ...font-weight:bold;">Trp29, Lys32, Lys37, Ala39, Phe40, Pro195, Pro196, Arg226 and Trp230 (colored in v...
9: ...duced protein is affected by <scene name='Journal:JBSD:20/Cv/7'>mutation of alanine to glycine amino-aci... - Journal:JBSD:21 (3,458 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:21/Cv/1' caption=''>
3: ...agarathai</big> <ref>doi 10.1080/07391102.2012.721496</ref>
6: ...ored in magenta</b></font>), <scene name='Journal:JBSD:21/Cv/8'>GLGF</scene> (<span style="color:coral;b... - Journal:JBSD:17 (3,214 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:17/Cv/2' caption=''>
3: ...Rafiee</big> <ref>DOI: 10.1080/07391102.2012.755134</ref>
6: ...ne>, in which the <scene name='Journal:JBSD:17/Cv/4'>DNA is wrapped in about 1.65 turns</scene> aroun...
8: ...ons in DNA bases are smooth (<scene name='Journal:JBSD:17/Cv/9'>click here to see animation</scene>).
9: ... with lower range of values (<scene name='Journal:JBSD:17/Cv/11'>click here to see animation</scene>). - Journal:JBSD:34 (2,130 bytes)
1: ...d='' size='450' side='right' scene='Journal:JBSD:34/Cv/1' caption=''> - Journal:JBSD:32 (1,112 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:32/Cv/5' caption=''>
3: ... Gmeiner</big> <ref>doi 10.1080/07391102.2012.732343</ref>
6: ...minor groove</scene> whereas <scene name='Journal:JBSD:32/Cv/7'>zinc binds to the major groove simultane... - Journal:JBSD:25 (1,626 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:25/Cv/1' caption=''> - Journal:JBSD:41 (3,195 bytes)
1: ...ad='' size='450' side='right' scene='Journal:JBSD:41/Cv/1' caption=''>
2: ... Mechanism of HIV-1 gp120 Mutations That Reduce CD4 Binding Affinity ===
3: ...h Sticht</big> <ref>doi 10.1080/07391102.2012.746946</ref>
6: ...herapeutic ligands include for instance soluble CD4 and its variants.
7: ...D4 binding by affecting the conformation of the CD4-binding and ODE-loop. This knowledge should be he... - Journal:JBSD:36 (2,574 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:36/Cv/2' caption=''>
3: ...n Sayed</big> <ref>doi 10.1080/07391102.2012.736774</ref>
6: ...in yellow</span>, [[2pc0]]). <scene name='Journal:JBSD:36/Cv/6'>Structural alignment</scene> of of the <... - Journal:JBSD:18 (2,677 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:18/Cv/3' caption=''>
6: ...rmation of loop3</scene> and <scene name='Journal:JBSD:18/Cv/16'>changes its interactions with the rest ...
7: [[Image:JBSD18.png|left|400px|thumb|Electrostatic potential map indicates t... - Journal:JBSD:19 (6,075 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:19/Cv/2' caption=''>
8: ...in N-acyltransferase <ref name="Brenner">PMID:12504683</ref>. Analysis of the sequences and structure...
10: ...ected CN-hydrolase fold. The <scene name='Journal:JBSD:19/Cv/7'>dimer</scene>, which was found in crysta...
13: [[Image:Fig2jbsd19.png|left|400px|thumb|]]
15: ...2 – following K110; and region 3 – flanking C146, which also has a protein signature consistent w... - Journal:JBSD:14 (2,503 bytes)
1: ...pdb' size='450' side='right' scene='Journal:JBSD:14/Cv/1' caption=''>
6: ...osphorylation of Tyr527 and phosphorylation of Tyr419 occurs.
7: ...ving away and opening the cleft as a result of Tyr419 phosphorylation can effectively inhibit Src act...
8: ...forementioned interactions with Src and high affinity with EGFR, HER2, and HSP90, we suggest th... - Journal:JBSD:15 (3,894 bytes)
1: ...SD15a.pdb' size='450' side='right' scene='Journal:JBSD:15/Cv/8' caption=''>
3: ...alsbury</big> <ref>DOI 10.1080/07391102.2012.680034</ref>
8: ...lmon</span>) in complex with <scene name='Journal:JBSD:15/Cv/3'>mismatched DNA</scene> (<span style="col...
9: ...ecognition and many of these <scene name='Journal:JBSD:15/Cv/9'>residues are known to be in cancer-assoc...
10: ...itors that interact with the <scene name='Journal:JBSD:15/Cv/12'>predicted mismatch signaling regions on... - Journal:JBSD:24 (2,253 bytes)
1: <StructureSection load='' size='450' side='right' scene='50/509381/Cv/9' caption=''...
7: ...lime;background-color:black;font-weight:bold;">D184N complex is in green</span> and <span style="colo...
8: ...lime;background-color:black;font-weight:bold;">D184N complex is in green</span> and for <span style="... - Journal:JBSD:33 (2,237 bytes)
1: ...on load='' size='450' side='right' scene='Journal:JBSD:33/Cv/1' caption=''>
6: ...d and validated. A docking study with a series of 42 5′-O-[N-(salicyl) sulfamoyl] adenosine derivat... - Journal:JBSD:31 (3,969 bytes)
1: <StructureSection load='' size='450' side='right' scene='51/512730/Cv/12' caption='...
3: ...sbury, Jr</big> <ref>DOI 10.1080/07391102.2013.799437</ref>
7: ...ave provided considerably detail as to how MutSα may respond to crosslinking due to cisplatin bi...
10: ...n of platinum-based damaged DNA adducts by MutSα, and others that may distinguish between the di...
11: ... domain, residues 620 to 855 in Msh2 and 715 to 974 in Msh6</b></font>.
Page text matches
- User:Alexander Berchansky (31,370 bytes)
55: CRISPR type I-U (GSU0054)
79: CRISPR type II-B (Cas4)
87: ... of a divalent metal ion to a novel and versatile 4D motif]]
88: *[[Journal:IUCrJ:S2052252521005340|X-ray crystallography studies of RoAb13 bound to...
90: *[[Journal:Acta Cryst D:S2059798320015004|The substrate binding in the bile acid transporte... - Prion protein (6,626 bytes)
1: ...e='350' side='right' scene='Prion_protein/Cartoon/4' caption=' NMR structure of human prion protein p...
14: ...rotein ''Proc. Natl. Acad. Sci. USA'' '''97''', 145-150</ref>. The structure of PrP<sup>C</sup> is h...
20: ... ''Proc. Natl. Acad. Sci. USA'' '''101''', 8342-8347</ref>. Support for this β-helical model comes f...
26: ...> (P102L, P105L, A117V, M129V, G131V, Y145Stop, R148H, Q160Stop, D178N, V180I, T183A, H187R, T188R, E...
27: ...mediate to PrP<sup>Sc</sup> ''Biochemistry '' '''41''', 12277–12283</ref>. - Epidermal Growth Factor Receptor (7,772 bytes)
6: ... '''ERBB3''' uses neuregulin as a ligand. '''ERBB4''' is a closely related [[Receptor tyrosine kinas...
12: ...lls proliferation and regeneration<ref>PMID:25848746</ref>. [[Afatinib]] is an EGFR inhibitor used i...
15: ...Image:800px-Signal_transduction_v1.png|thumb|left|400px|Signal Transduction Pathways Including that o...
17: ...ven more difficult <ref name='herbst'>pmid 15142631</ref>. Since overexpression of EGFR is an at...
21: ... of signal pathways <ref name='pao'>pmid 15329413</ref>. This regulation is essential for contro... - Bacterial Infections (2,075 bytes)
14: *[[Journal:JBSD:10|Para-(benzoyl)-phenylalanine as a potential in... - Erlotinib (2,530 bytes)
1: <StructureSection load='' size='450' side='right' scene='Erlotinib/Erlotinib/1' cap...
11: * See also [[Journal:JBSD:26|Investigation on the Site-Selective Binding of...
13: ...proliferation signal is terminated.<ref>PMID:15284455</ref><ref>PMID:11129168</ref> - Hormone (4,566 bytes)
23: * [[Journal:JBSD:2|Neurotensin]]
45: [[Image:7tm labeled.png|right|400px]]
56: [[1hd4]] - α-subunit of hCG <br />
73: [[3n94]] - PAC1R, receptor of pituitary adenylate cyclas...
104: ...mita Dutta and David S. Goodsell for the April 2004 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=edu... - Proteopedia:I3DC (78,583 bytes)
5: ...318014900 https://dx.doi.org/10.1107/S2059798318014900]
7: ...8017047 https://dx.doi.org/10.1107/S2059798318017047]
8: ...000214 https://dx.doi.org/10.1107/S2059798319000214]
10: ...002304 https://dx.doi.org/10.1107/S2059798319002304]
12: ...319004169 https://dx.doi.org/10.1107/S2059798319004169] - Neurotransmitters (24,452 bytes)
1: <StructureSection load='' size='400' side='right' scene='Acetylcholine/Cv/1' captio...
3: ...2ace]]). The residues <scene name='2ace/Cv/6'>Trp84 and Phe330</scene> are also important in the [htt...
8: ... picture below composed of 10 different alpha and 4 different beta subunits.
9: *<scene name='58/584302/Cv/1'>Side view</scene>.
10: *<scene name='58/584302/Cv/2'>View from extracellular side</scene>. - Receptor (30,758 bytes)
1: ...on load='' size='300' side='right' scene='Journal:JBSD:16/Cv/2' caption='Nicotinic Acetylcholine Recepto...
11: *[[Journal:JBSD:16|The extracellular subunit interface of the 5-H...
15: ...e another, thus assembling the <scene name='71/716487/Default/7'>intracellular region</scene>.
18: ... picture below composed of 10 different alpha and 4 different beta subunits.
19: *<scene name='58/584302/Cv/1'>Side view</scene>. - Ionotropic receptors (25,539 bytes)
9: ...site and contain the important side chains W90, Y143 and W195. The transmembrane region is comprised ...
11: *[[Journal:JBSD:16|The extracellular subunit interface of the 5-H...
13: ...for nicotinic acetylcholine (<scene name='Journal:JBSD:16/Cv/2'>nAChR</scene>, PDB code [[2bg9]]), γ-am...
14: ...cterized experimentally. The <scene name='Journal:JBSD:16/Cv/6'>ligand binding site</scene> of nAChR is ...
16: ...e> in a still debated arrangement.<ref>PMID:20724042 </ref> Subunits <font color='magenta'><b>A</b></... - Hormones and their receptors (6,013 bytes)
1: ...l- (green) ions (PDB code [[3mzg]])' scene='74/749401/Cv/1'>
16: *[[UMass Chem 423 Student Projects 2011-1#Beta-1 Adrenergic GPCR|...
28: *[[Journal:JBSD:2|Neurotensin]]
84: ...for designing a new class of SERMs]] <ref>PMID: 21473635</ref>
88: * [[Student Project 10 for UMass Chemistry 423 Spring 2015]]
View (previous 20) (next 20) (20 | 50 | 100 | 250 | 500)
You may also try
