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- Image:Ligand tunnel.png (0 bytes)
- Image:Ligand overlay.pdb (0 bytes)
- Category:Dansyl ligand (44 bytes)
1: List of pages with the keyword Dansyl ligand - Image:Mutation with ligand.pdb (0 bytes)
- Tumor necrosis factor ligand superfamily 3D structures (3,641 bytes)
1: ==3D structures of tumor necrosis factor ligand superfamily==
3: ...iption of the protein see [[Tumor necrosis factor ligand superfamily]]
6: * Tumor necrosis factor ligand superfamily member 1 (Lymphotoxin-beta)
10: * Tumor necrosis factor ligand superfamily member 2 see [[Tumor necrosis factor]...
12: * Tumor necrosis factor ligand superfamily member 3 (Lymphotoxin-alpha) - Image:Ligand copy.pdb (0 bytes)
- Image:Glycerol Ligand in Ferritin 3KX9.png (20 bytes)
- Image:Ligand 3ljj ProteinPlus.png (205 bytes)
2: ...n trypsin and a small-molecule trypsin inhibitor, PDB code 3ljj. Created with PoseEdit at https://prote... - Ligand (2,978 bytes)
1: ... substrate or inhibitor ligands. Avidin binds the ligand biotin.
3: ...dia places beneath molecules under the category ''Ligands'' are based on a somewhat different definition, ...
5: ...e [[PDB file format]] is structured. All atoms in PDB files are classified into two groups: atoms in [[...
7: ... addition to moieties ordinarily considered to be ligand, such as metal ions and small organic compounds o...
9: ...[Non-Standard Residues|non-standard residues]] as ligand, which avoid them being invisible in a backbone-o... - Category:Ligand binding (50 bytes)
1: List of structures with the keyword Ligand binding - Category:Protein-ligand complex (58 bytes)
1: List of structures with the keyword Protein-ligand complex - Category:Ligand-binding domain (52 bytes)
1: List of pages with the keyword Ligand-binding domain - Category:Retinoid ligand complex (54 bytes)
1: List of pages with the keyword Retinoid ligand complex - Category:Transcriptionally active conformation in absence of ligand (89 bytes)
1: ...anscriptionally active conformation in absence of ligand - Category:Ligand-dependent (47 bytes)
1: List of pages with the keyword Ligand-dependent - Category:Beta ligand substitution (55 bytes)
1: List of pages with the keyword Beta ligand substitution - Category:Ligand binding protein (53 bytes)
1: List of pages with the keyword Ligand binding protein - Category:Enzyme-ligand complex (52 bytes)
1: List of pages with the keyword Enzyme-ligand complex - Category:Ligand (37 bytes)
1: List of pages with the keyword Ligand - Category:Rna-ligand interaction (53 bytes)
1: List of pages with the keyword Rna-ligand interaction
Page text matches
- Help:Editing (24,612 bytes)
55: : <nowiki><Structure load='Insert PDB code or filename here' size='X' frame='X' align='...
65: ====load='Insert PDB code or filename here' ====
66: ...loaded files. If your desired file is not in the PDB database and not yet uploaded to Proteopedia, you...
107: ...tting the initial scene in the Structure Box of a PDB entry page==
108: ...g "Structure Box", as we like to call it, on each PDB entry page with the 3D structure applet with all ... - Acetylcholinesterase (8,905 bytes)
1: ...che_with_ach/2' caption='Torpedo california AChE (PDB code [[2ace]])'>
13: ...rtant in the [http://en.wikipedia.org/wiki/Ligand ligand] recognition <ref name="Raves">PMID:8989325</ref>... - Image:Pdb1kvl chain b.pdb (54 bytes)
1: Chain B protein, ligand and waters from PDB entry 1KVL - Image:Pdb1kvl chain A.pdb (54 bytes)
1: Chain B protein, ligand and waters from PDB entry 1KVL - Image:Pdb1kvl chain B.pdb (53 bytes)
1: Chain B protein, ligand and water from PDB entry 1KVL - 3by5 (2,483 bytes)
7: ...SE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3by5 ProSAT], [https://www.topsan.org/Protein...
18: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3by5 ConSurf]. - Hemoglobin (19,234 bytes)
24: ...e" versus the liganded "oxy" or "R state". The unliganded (deoxy) form is called the "T" (for "tense") st...
28: ...ue' align='right' caption='Human deoxyhemoglobin (PDB code [[3hhb]])'/> -->
30: ..., the proximal histidine (the tightest protein Fe ligand) is often called <scene name='32/32/Hisf9/1'>His ...
32: ...ws a subunit in the all-unliganded versus the all-liganded states of Hb; when oxygen binds to just one sub...
43: ...d relative affinities for O<sub>2</sub> and other ligands, by virtue of heme-pocket differences, but the d... - 1zk8 (2,708 bytes)
7: ... class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zk8 ProSAT], [https://www.topsan.org/Protein...
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zk8 ConSurf]. - 1zkd (2,724 bytes)
7: ... class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zkd ProSAT], [https://www.topsan.org/Protein...
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zkd ConSurf]. - Acetylcholine (3,078 bytes)
3: <applet load='Ach1.pdb' size='400' frame='true' align='right'
14: ...rtant in the [http://en.wikipedia.org/wiki/Ligand ligand] recognition. After this binding acetylcholineste... - NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol (8,927 bytes)
1: <StructureSection load='2f1o.pdb' size='350' frame='true' side='right' scene='2f1o...
10: ...lime</b></font>. NQO1 residues, participating in ligand interactions, are shown as stick representation a...
14: ...b></font> dimer ([[1d4a]], residues important for ligand interactions are <font color='blue'><b>colored bl...
24: Structural comparison of the apo hNQO1 dimer (PDB accession code 1D4A in cyan) with hNQO1 in comple... - Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
1: ...hionine, phosphate, Ca+2 (green) and Zn+2 (grey) (PDB code [[1xjo]])'>
15: ...as ligands for the second ion. Asp97 is a common ligand to both ions. What appears to be a phosphate ani... - 117e (5,307 bytes)
7: ...N:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=117e ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=117e ConSurf].
24: ...tional studies measuring catalytic efficiency and ligand (metal ion, PPi and Pi) binding, provide strong e...
30: <div class="pdbe-citations 117e" style="background-color:#fffaf0;... - 1dan (5,989 bytes)
5: ....doi.org/10.2210/rcsb_pdb/mom_2006_3 10.2210/rcsb_pdb/mom_2006_3]. Full crystallographic information is...
7: ...gand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dan ProSAT]</span></td></tr>
22: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dan ConSurf].
32: <div class="pdbe-citations 1dan" style="background-color:#fffaf0;... - 8gpb (5,904 bytes)
5: ...doi.org/10.2210/rcsb_pdb/mom_2001_12 10.2210/rcsb_pdb/mom_2001_12]. Full crystallographic information i...
7: ...OSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gpb ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=8gpb ConSurf].
30: <div class="pdbe-citations 8gpb" style="background-color:#fffaf0;... - 2src (9,009 bytes)
5: ...doi.org/10.2210/rcsb_pdb/mom_2004_12 10.2210/rcsb_pdb/mom_2004_12]. Full crystallographic information i...
7: ...CID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2src ProSAT]</span></td></tr>
22: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2src ConSurf].
26: ... of the regulatory domains, induced by SH2 or SH3 ligands, or by dephosphorylation of Tyr-527, could lead ... - Scene authoring tools (23,035 bytes)
11: Insert PDB code or filename here' size='350' frame='true' al...
38: ...e load button. The file will be fetched from the PDB database.
40: To load a file that is not part of the PDB, first upload the file to Proteopedia at [[Specia...
47: ...de water, include or exclude other hetero groups (ligands), load a specified biomolecule (biological unit)...
80: .... The 'sites' box appears only if your file is a PDB file that has predefined sites that the authors d... - 1m85 (2,936 bytes)
5: ...2cae] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1cae 1cae]. Full crystallographic inform...
7: ...T:S-DIOXYMETHIONINE'>OMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m85 ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m85 ConSurf]. - 100d (3,251 bytes)
7: ... class="sblockDat" id="ligandDat"><scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=100d ProSAT]</span></td></tr>
18: <div class="pdbe-citations 100d" style="background-color:#fffaf0;... - 101d (3,338 bytes)
7: ...and=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NT:NETROPSIN'>NT</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=101d ProSAT]</span></td></tr>
18: <div class="pdbe-citations 101d" style="background-color:#fffaf0;...
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