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- User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012 (17,130 bytes)
74: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol - Missing residues and incomplete sidechains (25,887 bytes)
312: ==Missing residues and atoms lists in PDB and mmCIF files==
342: ===mmCIF Format===
344: ...docs/pdb_to_pdbx_correspondences.html PDB to PDBx/mmCIF Data Item Correspondences] provides <b>no</b> inf...
346: ...oly.html _pdbx_missing_atom_poly]</tt> are in the mmCIF dictionary, they are described as <b>not used in ...
348: ...dbx_unobs_or_zero_occ_atoms]</tt>. However, these mmCIF categories lump together missing (unobserved) and... - Journal:Acta Cryst D:S2059798324005461 (10,979 bytes)
22: ...nloaded from this site in both the legacy PDB and mmCIF formats. - Asparaginase (4,953 bytes)
23: ...nloaded from this site in both the legacy PDB and mmCIF formats. - Atomic coordinate file (9,130 bytes)
17: ...B format''.</ref>. The remainder are available in mmCIF format (see below). 88% of entries were determine...
34: ...document].</ref>. The PDB sometimes refers to the mmCIF format as "PDBx", which should not be confused wi...
36: ...ries with novel ligands will be available only in mmCIF format, since the legacy PDB format cannot accomm...
38: ...Thereafter, new entries will be available only in mmCIF format using [[PDB_identification_code#Future_Pla...
40: ===mmCIF Data Format=== - PDB identification code (7,742 bytes)
41: ...ble in [[Atomic_coordinate_file#mmCIF_Data_Format|mmCIF format]] only, since the legacy [[PDB format]] wi... - User:Wayne Decatur/Chem791A Work Session (4,579 bytes)
26: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol - Water in macromolecular models (2,838 bytes)
6: ... SOLVENT CONTENT, VS (%): 52.00</pre>and in the mmCIF file:<pre> - User:Wayne Decatur/Biochem642 Molecular Visualization Sessions (7,036 bytes)
49: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol - Structure superposition tools (28,712 bytes)
132: ...A and B. If done at RCSB, download has 2 separate mmCIF files. - User:Wayne Decatur/Biochem642 Molecular Visualization 2010 Fall Sessions (9,196 bytes)
76: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol - Jmol/Visualizing large molecules (15,381 bytes)
20: ...n the [[Atomic coordinate files#mmCIF_Data_Format|mmCIF format]] can be read by Jmol, and do not suffer f... - User:Wayne Decatur/UNH Seminar Feb 1st 2011 (11,864 bytes)
151: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol - User:Wayne Decatur/UNH CME Workshop March 11 2011 (12,759 bytes)
92: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol
146: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol - User:Wayne Decatur/NASCE2011 (19,987 bytes)
127: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol
200: ...: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif, cml, mol, xyz, kin, mmol - Isopeptide bond (9,310 bytes)
39: ! PDB Format !! mmCIF Format - Chains and Chain IDs (15,029 bytes)
23: ...t]] (also called PDBx), chain IDs can be [https://mmcif.wwpdb.org/docs/large-pdbx-examples/index.html up ...
32: ...author-assigned chain IDS (in both PDB format and mmCIF format files). Traditionally deemed ligands, dipe...
36: ...tion are the interpretations of a small sample of mmCIF files by [[User:Eric Martz]], and might contain e...
38: ... the mmCIF files, not in the PDB format files. In mmCIF files, there is no single place that lists all au...
228: ...the chain ID assignment policies of the wwPDB for mmCIF files, every entity is assigned a unique chain ID... - How JSmol Works (5,662 bytes)
20: ...ounds (usually <100 atoms), and [[PDB file|PDB or mmCIF formats]] for macromolecules. - User:Eric Martz/How JSmol works (5,652 bytes)
20: ...ounds (usually <100 atoms), and [[PDB file|PDB or mmCIF formats]] for macromolecules. - Alternate locations (8,734 bytes)
92: ...on is in '''_atom_site.label_alt_id''' records in mmCIF files.
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