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Article title matches
- Category:Molecular modeling (49 bytes)
1: List of pages with the keyword Molecular modeling - Category:Modeling (39 bytes)
1: List of pages with the keyword Modeling - Category:Homology modeling (48 bytes)
1: List of pages with the keyword Homology modeling - Category:Membrane modeling (48 bytes)
1: List of pages with the keyword Membrane modeling - Molecular modeling and visualization software (8,477 bytes)
1: ==Visualization vs. Modeling==
3: ...ting molecular model without changing it, while ''modeling'' software can create the model, or modify it by ...
15: ...onnect.net/ Samson], a powerful visualization and modeling package that is menu-driven. Free for basic use. ...
27: ==Free molecular modeling software==
29: Molecular modeling software usually includes visualization capabilit... - Image:Center for BioMolecular Modeling Logo.jpg (110 bytes)
2: Center for BioMolecular Modeling Logo - User:Wayne Decatur/Homology Modeling (8,425 bytes)
2: **[[Homology model|Homology modeling page]] at Proteopedia
3: ... coli DnaC helicase loader| Eric Martz's Homology modeling of DnaC]]
5: ...htly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bi...
6: ...cularLevel/Matics/index.html Gale Rhodes Homology modeling tutorial using Swiss PDB Viewer (DeepView)]
7: ...diction by HMM-HMM comparison] - Because homology modeling relies on identifying homologous sequences with k... - Practical Guide to Homology Modeling (26,760 bytes)
2: <big>Homology modeling has become largely obsolete since the 2020 succes...
5: .../en.wikipedia.org/wiki/Homology_modeling Homology modeling] is well documented, although more technical and ...
14: {{Template:Homology_Modeling_Intro}}
16: == Rationale for homology modeling ==
84: ...be futile. Therefore, before considering homology modeling or crystallization experiments, it is important t... - User:Wayne Decatur/Molecular modeling tools (6,392 bytes)
1: ...ling Platform] - Small Molecule and Macromolecule Modeling and Simulations.
3: ... Python-based interface for Interactive Molecular Modeling.
7: ...BViewer = DeepView]], a powerful and popular free modeling package (not open-source). Has an interface linke...
9: ...lso YASARA Structure features a complete homology modeling module that fully automatically takes all the ste...
15: ...d Side Chain Atomic eneRgy )] performs side-chain modeling based on orientation-dependent energy functions a... - Category:De novo modeling (47 bytes)
1: List of pages with the keyword De novo modeling - Homology modeling servers (8,326 bytes)
3: ...or protein sequences. The performance of homology modeling methods is evaluated in an international, biannua...
12: ...-MODEL] provides a free, fully-automated homology modeling service. Using the ''Automated Mode'', you submit...
16: ...www.ncbi.nlm.nih.gov/pubmed/17640066 The Homology Modeling Automatically (HOMA) web site].
20: ...eality Application) features a complete homology modeling module that fully automatically takes all the ste...
23: MetaServers are servers that submit your modeling job to other servers. - Homology modeling (660 bytes)
2: <big>Homology modeling has become largely obsolete since the 2020 succes...
6: {{Template:Homology_Modeling_Intro}}
8: ...y model, please see [[Practical Guide to Homology Modeling]].</span>
11: *[[Practical Guide to Homology Modeling]]
12: *[[Homology modeling servers]] - Category:Computer modeling (48 bytes)
1: List of pages with the keyword Computer modeling - Category:This is a model obtained by nmr-restrained modeling and minimization (99 bytes)
1: ...eyword This is a model obtained by nmr-restrained modeling and minimization
Page text matches
- Hemoglobin (19,234 bytes)
73: ...of Hemoglobin at The MSOE Center for BioMolecular Modeling== - 1vyo (4,008 bytes)
24: ...lorimetry, UV/visible spectroscopy, and molecular modeling were used to analyze the binding of 15 azo molecu... - 1wcb (4,834 bytes)
22: ...and 2.5A resolution, respectively, and served for modeling the complexes with the corresponding planar imine... - 3pcn (5,094 bytes)
24: ...erobic 3,4-PCD.PCA complex based solely on direct modeling of the 2Fo - Fc electron density and suggests tha... - 8pch (4,913 bytes)
24: ...itioning the mini-chain in the active-site cleft. Modeling of a substrate into the active-site cleft suggest... - 1sp2 (5,358 bytes)
11: ...response to DNA damage. Implicated in chromatin remodeling. Plays a role in the recruitment of SMARCA4/BRG1 ...
24: ...lex is also preserved in unbound Sp1f2 and Sp1f3. Modeling Sp1-DNA complex by overlaying the Sp1f2 and Sp1f3... - 1sp1 (4,610 bytes)
11: ...response to DNA damage. Implicated in chromatin remodeling. Plays a role in the recruitment of SMARCA4/BRG1 ...
14: ...lex is also preserved in unbound Sp1f2 and Sp1f3. Modeling Sp1-DNA complex by overlaying the Sp1f2 and Sp1f3... - 1h75 (4,370 bytes)
23: ...ic pocket at the surface, similar to thioredoxin. Modeling studies suggest that NrdH-redoxin can interact wi... - 1gww (4,693 bytes)
24: ...e location of these monosaccharides and molecular modeling suggest that binding of a distorted conformation ... - 1gwv (4,810 bytes)
24: ...e location of these monosaccharides and molecular modeling suggest that binding of a distorted conformation ... - 9v0i (3,202 bytes)
13: ...ket of Apg. Structural analyses and computational modeling reveal D448 as the active nucleophile, contrastin... - 1ha5 (4,631 bytes)
24: ...ass II recognition are explored using a molecular modeling approach. The results indicate that, despite thei... - 1avw (4,676 bytes)
24: ... thus retains a nominal trigonal planar geometry. Modeling studies on the complex between a homologous Kunit... - 1avu (4,352 bytes)
23: ... thus retains a nominal trigonal planar geometry. Modeling studies on the complex between a homologous Kunit... - 1avx (4,673 bytes)
24: ... thus retains a nominal trigonal planar geometry. Modeling studies on the complex between a homologous Kunit... - 2ccr (5,137 bytes)
26: ...-galactanase by crystallography and computational modeling.,Le Nours J, De Maria L, Welner D, Jorgensen CT, ... - 1pgg (5,077 bytes)
24: ...indomethacin complex structure precludes detailed modeling of drug-enzyme interactions, but the electron-den... - 1pgf (5,075 bytes)
24: ...indomethacin complex structure precludes detailed modeling of drug-enzyme interactions, but the electron-den... - 2j6i (4,652 bytes)
24: ...rmed based on physiological studies and structure modeling. However, X-ray structural information has been r... - Research Groups, Institutes & Programs (648 bytes)
7: ...MART:Teams|SMART Teams]], Center for BioMolecular Modeling, Milwaukee School of Engineering, Milwaukee, Wisc...
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