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- MolProbity (1,733 bytes)
1: [[Image:MolProbity_Logo_610x300_Wbkg.jpg|thumb|left|120px|]]
2: ...g|thumb|right|280px|Graphical validation icons in MolProbity]]
3: ...asures, and a few new criteria for RNA structure. MolProbity produces a variety of both global and local numer...
21: ==MolProbity Score and Percentiles== - Image:MolProbity Logo 610x300 Wbkg.jpg (164 bytes)
2: ... Created by Ian W. Davis, original programmer of MolProbity.
Page text matches
- 4h20 (4,206 bytes)
11: ... template modeling score (TM-score), Z-score, and MolProbity analysis. FINDINGS: The crystal structure showed ... - Proteopedia:Wishlist (29,517 bytes)
36: * '''Molprobity''' could be added under ''About this structure'' ... - Clashes (5,111 bytes)
14: ... to the Protein Data Bank (PDB) are analyzed by [[MolProbity]], which adds hydrogen atoms (where absent), dete...
18: ...ution 3.7 Å, contains 22,911 non-hydrogen atoms. MolProbity added 20,895 hydrogens for a total of 43,806 atom...
27: **MolProbity offers visualization of clashes in [http://nglvie... - User:Jane S. Richardson (765 bytes)
6: *[[MolProbity]] - Quality assessment for molecular models (11,872 bytes)
3: ...bity-server">[http://molprobity.biochem.duke.edu/ MolProbity Server]: All-atom contact analysis, flip correcti...
17: :The above analyses are available from [[MolProbity]], or from the [http://swift.cmbi.ru.nl/servers/h...
18: ...re, Asn/Gln/His flips), analyses available from [[MolProbity]].
39: ... uncertainty in that local region of the model. [[MolProbity]]'s analysis, termed ''all atom contact analysis'...
41: ...published crystallographic models. Fortunately, [[MolProbity]] does these determinations automatically, and co... - Hydrogen in macromolecular models (10,118 bytes)
49: ...ash score'' reported by the first method below, ''Molprobity''.
51: ...ery powerful [http://molprobity.biochem.duke.edu/ MolProbity: All-Atom Contact Analysis] server. Hydrogens are...
61: ...del containing protein, DNA and 51 water oxygens. MolProbity reports its clashscore as 11.7, 65th percentile. ...
64: |+ Comparing MolProbity and WHATIF on 1d66
67: | MolProbity || 982 || 427 || ... - Improving published models (1,444 bytes)
3: ==MolProbity==
5: ...ains in suboptimal positions in published models. MolProbity recommends which sidechains have strong evidence ...
7: Molprobity's analyses of atomic clashes and geometry are use... - MolProbity (1,733 bytes)
1: [[Image:MolProbity_Logo_610x300_Wbkg.jpg|thumb|left|120px|]]
2: ...g|thumb|right|280px|Graphical validation icons in MolProbity]]
3: ...asures, and a few new criteria for RNA structure. MolProbity produces a variety of both global and local numer...
21: ==MolProbity Score and Percentiles== - Structural bioinformatics servers (2,227 bytes)
14: * [[Improving published models]] e.g. MolProbity and PDB_REDO. - CAP-Gly domain (2,581 bytes)
12: ...of a systematic 30-structure test of the then-new MolProbity methods for diagnosing and correcting problems in... - Image:Ramachandran general-case data and contours T8000 small.jpg (616 bytes)
2: ...crystal-structure chains with both resolution and MolProbity score <2.0, non-redundant at the PDB's 70% cluste... - Image:Ramachandran Gly Pro data and contours T8000 small.jpg (599 bytes)
2: ...crystal-structure chains with both resolution and MolProbity score <2.0, non-redundant at the PDB's 70% cluste... - Image:Validation outlier legend.jpg (114 bytes)
2: ...aphical icons for validation outliers, as used in Molprobity. - Image:MolProbity Logo 610x300 Wbkg.jpg (164 bytes)
2: ... Created by Ian W. Davis, original programmer of MolProbity. - User:Nikhil Malvankar/Geobacter pilus (6,003 bytes)
24: ...le because model 5 had the best clash score and [[MolProbity]] score.</ref>. - 5jpn (6,193 bytes)
15: ...y correct and re-refine these three structures to MolProbity scores of <1.7, and strategies for working wit... - 5jpm (6,169 bytes)
15: ...y correct and re-refine these three structures to MolProbity scores of <1.7, and strategies for working wit... - User:Camille Zumstein/Sandbox (11,682 bytes)
29: ...ttp://mordred.bioc.cam.ac.uk/~rapper/rampage2.php MolProbity of the DUke University]. It plots the torsional a... - User:Fadel A. Samatey/FlgE III/Intrinsically Disordered Flagellar Rod Stretch (18,138 bytes)
112: ...etermined by [http://molprobity.biochem.duke.edu/ Molprobity] as the number of serious steric atomic overlaps ... - 7q3v (4,307 bytes)
13: ...ber-refined structures consistently show superior MolProbity scores. The new approach offers a highly realisti...
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