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1. Image:Morph-lin-6vr4-to-af2-CAO.pdb (0 bytes)
2. Image:Morph-lin-6vr4-to-2nd-CAO.pdb (0 bytes)
3. Image:1QLNA 1MSWD 10.morph.pdb (68 bytes)
   1: FATCAT morph Interpolating between structure 1QLNA.pdb and 1MS...
4. Image:Canner HIV morph.pdb (0 bytes)
5. Image:1a0r-vs-af3-morph-licorice-far.gif (0 bytes)
6. Image:1yve i knot morph.pdb (155 bytes)
   1: Morph of pulling a knot in [[1yve]] chain I. Data kindl...
7. Image:1tph 1 noknot morph.pdb (43 bytes)
8. Image:Pasted morph.pdb (0 bytes)
9. Image:1osl 19 1l1m 9 morph.pdb (280 bytes)
   1: ... construct this morph, please see [[Lac_repressor_morph_methods]].
10. Lac repressor morph methods (4,788 bytes)
    1: ...his page describes the methods used to create the morph displayed at:
    3: * [[Lac repressor#Morph of Conversion]]
    4: * [[Morphs]]
    11: ...able within Proteopedia as [[Image:1osl_19_1l1m_9_morph.pdb]].
    18: ...polated frames during wireframe animations of the morph. These appear as "wads" of bonds or "cobwebs".
11. Image:1osl 14 1l1m 9 morph.pdb (225 bytes)
    1: ...is a duplicate of the file [[Image:1osl_19_1l1m_9_morph.pdb]] because I had problems loading that file.
12. User:Wayne Decatur/I-Ppo Morph Methods (7,548 bytes)
    1: ... under DNA Tools) as described in [[Lac repressor morph methods]]. <nowiki>[</nowiki>UPDATE: The Model It...
    6: ...to match atom numbers with the aligned 1a73 and removed the SO4s. I deleted the 2 Magnesiums in the ali...
    8: ...o that I could match up the number of atoms since morphing needs equal numbers. I also needed to change ...
    52: ...s with the nucleic acid and they came back nicely morphed. IT WORKED.
13. Image:3dpl 3dqv acr morph.pdb (632 bytes)
    2: ...th model) without the need for special alignment. Morph done by Eric Martz at the request of Raymond J. D...
14. Image:Morph 2ipy-2b3x.pdb.gz (96 bytes)
    2: 20 image morph between 2ipy and 2b3x, from Yale server
15. Image:3dqv trimer1 trimer2 morph.pdb.gz (153 bytes)
    2: Morph (Yale Morph Server beta.cgi, ID b318728-3599) between the two...
16. Image:2oau 2vv5 morph.pdb.gz (93 bytes)
    2: Yale morph server (beta) morph from 2oau to 2vv5.
17. Image:2oau 2vv5 morph cao.pdb.gz (228 bytes)
    2: ...ID=b182826-5521, the Yale Morph Server (beta.cgi) morphing 2oau to 2vv5. Only the alpha carbon atoms are ...
18. Image:2oau 2vv5 27-112 morph.pdb.gz (284 bytes)
    2: ...in for the morph. http://www.molmovdb.org/cgi-bin/morph.cgi?ID=b286401-18956
19. Image:B-Z Morph Movie.mpg (55 bytes)
20. Image:Morph a-b.pdb (29 bytes)

Page text matches

1. User:Karsten Theis/Rigid body interpolation (4,709 bytes)
   1: ...oerpositions and to create morph, see [[Jmol/Storymorph]].
   97: ...s a trimer with chains A, B, and C. Each chain is morphed individually
   104: // Atom sets s1 and s2 will be moved into a common frame on the path from s1 to s2.
   113: // To save this step in the morph, un-comment the following three lines while runni...
   114: // fname = "morph" + i + ".pdb"
2. Image:3hg2to3.pdb.gz (19 bytes)
   1: morph 3hg2 to 3hg 3
3. Image:Better3hg2to3.pdb.gz (18 bytes)
   1: 3hg2 to 3hg3 morph
4. Art:Spike protein conformation change (371 bytes)
   3: Morph between 6xr8 and 6xra, animated to move like swimming objects. For the science backgroun...
5. Teaching Scenes, Tutorials, and Educators' Pages (12,182 bytes)
   66: *[[Lac repressor]]: Introduction, structure, morph of the conversion from non-specific to specific D...
   103: ...erin, a calcium-activated myristoyl switch]] with morph animations.
6. Missing residues and incomplete sidechains (25,887 bytes)
   2: ...et dealt with multiple-chain assemblies. I will remove this notice when I have done so. [[User:Eric Mar...
   11: ... during [[X-ray crystallography]] can sometimes remove atoms<ref name="damage">PMID: 10639129</ref>, an...
   125: ...et1 is missing. This spherical empty basket was removed in the image showing the putative catalytic tri...
   136: ...with [[RMSD]] 2.4 &Aring;. The FATCAT-generated [[morph]] between the two models shows their similarity. ...
   140: [[Morph]] Between Models
7. User:Alexander Grayzel/Sandbox 1 (15,974 bytes)
   46: ... On top of this, glycerol also has the ability to morph its diffusion pores to prevent water from enterin...
8. Sculpting protein conformations (6,480 bytes)
   3: ...morphs]] in Proteopedia. Slides explaining how to morph a sculpted protein are available at [http://tinyu...
   9: ...versal force field''. This is demonstrated in the movie available at [http://tinyurl.com/sculpting-prot...
   22: ... version]. ''Minimize'' was not turned on in this movie.
   36: ...ation. However see the step-by-step instructional movie at [http://tinyurl.com/sculpting-proteins tinyu...
9. Sandbox UC 9 (2,556 bytes)
   13: ...a lipase ([[1trh]], [[1lpm]]).' scene='Lipase_lid_morph/Lightseagreen_hinge/1' />
   14: ...ase see the article [[Lipase]]. This ''Lipase lid morph'' article is a supplement to the main article on ...
   18: ...green'><b>LID</b></font> (<scene name='Lipase_lid_morph/Lightseagreen_hinge/1'>restore initial scene</sce...
   19: *<scene name='Lipase_lid_morph/Lightseagreen_hinge/4'>Open</scene> <font color='...
   21: ...olation morph]]. The 14-model PDB file is [[Image:Morph-linear-1trh-1lpm.pdb.gz]].</ref> shows the lid op...
10. Proteopedia:Practical Guide to Advanced Proteopedia Authoring and Its Use in Teaching (16,838 bytes)
    20: ...as those involved in ligand binding; see [[Morphs#Morphing Methods]].
    44: ...unt access, as it may become useful to keep class moving productively. If using a shared account, be su...
11. Image:3hg3to4.pdb.gz (87 bytes)
    1: morph of 3hg3 to 3hg4
12. AlphaFold2 examples from CASP 14 (26,979 bytes)
    20: ...nerated by the [[Morphs#Linear_Morph_Server|Theis Morph Server]] by linear interpolation.</ref>. The only...
    23: ...lmovdb.org/wiki/info/index.php/Morph2_Server Yale Morph2 Server]. Homogenization method: homology modelin...
    48: ...nerated by the [[Morphs#Linear_Morph_Server|Theis Morph Server]] by linear interpolation.</ref> of Swiss-...
    62: ...nerated by the [[Morphs#Linear_Morph_Server|Theis Morph Server]] by linear interpolation.</ref>. This pre...
    101: <scene name='87/875686/Morph_lin_6vr4_to_af2/1'>AlphaFold2 predicted the struc...
13. User:Eric Martz (29,816 bytes)
    39: ...roteopedia.org/wiki/scripts/Morphs/1osl_19_1l1m_9_morph/2.spt
    110: *[[Flaps Morph for HIV Protease]]
    114: *[[Lipase lid morph]]
    116: ...ensitive channels: opening and closing]] included MORPHS
    121: *[[Proton Channels]], which includes an animated morph.
14. Eric Martz's Favorites (2,342 bytes)
    3: ...zyme to disc membranes in rod cells in the eye. [[Morphs]] of this transition are [[Recoverin, a calcium-...
    5: ...n 2004 ([[1osl]]) made possible a [[Lac repressor|morph of the DNA bending during specific recognition by...
    10: ...aminidase, Tamiflu and Relenza]] which includes a morph of the induced fit, and visualization of the cavi...
15. Proteopedia:Wishlist (29,517 bytes)
    12: ...e, it would be nice to retain the links, and to remove the scrollable structure section (maybe replacin...
    15: ...rk into PDB when returning a morph from the pymol morph server
    100: ... adding new display options, like 2 jmols, so I'm moving this up. - [[User:Kevin Karplus]] -18 Aug 2008...
    130: ...', one could, for example, select ''cys'', then remove ''cystine'' from selection, leaving ''cysteine''...
    150: ...n''' and add '''add to representation''' and '''remove from representation'''. This allows, for example...
16. Proteopedia:Topic Pages (8,541 bytes)
    12: <!-- Start of topic pages. Please DON'T REMOVE -->
    73: ...[Flaps Morph for HIV Protease|HIV Protease: Flaps Morph]]
    82: *[[Lipase lid morph]]
    88: ...nsitive channels: opening and closing]] (includes morphs)
    92: *[[Morphs]] of conformational changes of macromolecules
17. Synthetic nanomaterials from standardized protein blocks (13,050 bytes)
    3: ...page is under construction. This notice will be removed when it is ready. [[User:Eric Martz|Eric Martz]...
    118: ...orph in reverse (towards assembly), producing six morphs 6->5, 5->4, ... 1->0 (where 0 is the fully assem...
    119: ...[[Help:Plain text editors plain text editor], the morph files were concatenated in the direction of assem...
    120: ...have one duplicate frame. Those duplicates were removed by text editing.
    122: # A morph of the assembled cube rotating slightly was made,...
18. Proteopedia:Problems (18,636 bytes)
    68: ...A Kinks, green link "2 leucines". The induced fit morph at [[Avian Influenza Neuraminidase, Tamiflu and R...
    72: ...l accepts them as they are. I have here a 11,5 MB morph that when gzipped is only 2,8 MB. I don't want to...
19. Proton Channels (2,108 bytes)
    1: ...Channels/Cartoon/2' caption='Linear interpolation morph from [[3bkd]] to model 1 of [[2rlf]]. '>
    7: ...zed by rimantadine. (Neither drug is shown in the morph at right.)
    10: caption='Linear interpolation morph from [http://proteopedia.org/wiki/index.php/3bkd ...
    12: At right is a [[Morphs|linear-interpolation morph]] between 3BKD and 2RLF, showing the proposed ope...
    17: ...ue to the [[Morphs|linear interpolation method of morphing]].) Here are His and Trp <scene name='Proton_C...
20. Image:Tres EH eMorph.pdb (57 bytes)
    1: A morph for testing the morphing features of Proteopedia.

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