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  1. Main Page 20190127 (6,331 bytes)
    2: <div style="font-size:1.5em;border:1px solid #ddd;background-color:yellow;">Server main...
    3: Proteopedia will be down for infrastructure maintenance f...
    7: ...not be possible to create new userIDs during this period.
    10: <!--Banner Across Top of Page-->
    11: ...5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;"
  2. User:Jaime Prilusky/page'quote (322 bytes)
    1: A page with a single quote character in the name
    2: ...ght' caption='Insert caption here' scene='Insert optional scene name here' />
    3: ...User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
    4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene>
  3. Main Page Static (1,585 bytes)
    1: [[Image:1eve_Static.png|right|400px]]<br />
    2: <big>Welcome to Proteopedia,</big>
    4: The collaborative, 3D encyclopedia of proteins and other molecules.
    6: ...: yellow;color:darkred;font-weight:bold;padding:10px;">
    7: ...ecules in Proteopedia. Please download Java at http://www.java.com
  4. Proteopedia:Best Page Competition (54 bytes)
    1: #REDIRECT [[Proteopedia:Page of the Year Competition]]
  5. Category:Page RC (38 bytes)
    1: List of pages with the keyword Page RC
  6. Proteopedia Page Contributors and Editors (1,834 bytes)
    1: Proteopedia grows through an ongoing community effort.
    3: ...the real names of those who have been directly responsible for what you are
    4: ...in names of users whose contributions have been replaced or removed.
    6: ...priate credit for their contributions and take responsibility for their entries.
    8: ==Content Donors ''vs'' Proteopedia Page Contributors and Editors==
  7. Proteopedia:Page of the Year Competition (3,357 bytes)
    2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
    3: [[Image:Proteopedia_mug.jpeg|right|200px]]
    5: ... Competition'''! Could your page be '''''the best page'''''?
    7: ...ust how fun and easy it is to edit pages in Proteopedia, and continue contributing in the future.
    9: <font color='red'>The competition ends on December 31, 2009.</font>
  8. Proteopedia:Page of the Year Entrants (2,819 bytes)
    1: ...e Year Competition]] here. You can enter as many pages as you like.
    2: ...then a link to the page you're entering in the competition.
    8: ...ust an example, Eran cannot participate in the competition.
    12: # [[User:Sara Toftegaard Petersen]] [[User:Mathilde Thomsen]] [[User:Mette T...
    14: ...- [[User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing]]
  9. Proteopedia:Page of the Year Competition 2009 Winners (88 bytes)
    1: ...nners of the Proteopedia 2009 Page of the Year Competition will be announced here.
  10. Proteopedia:Main page develop (7,341 bytes)
    1: ...e="width:100%; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
    4: ...top:0.5em; padding-left:30.0px;">Welcome to Proteopedia,</div>
    5: ....0px;">The free, collaborative 3D encyclopedia of proteins &amp; other molecules</div>
    7: <table width="100%" colspan="2">
    9: ... <font color="blue">•</font> [[Help:Contents|Help]]</td>
  11. Main Page News (1,960 bytes)
    2: ===Proteopedia on iPads!===
    3: ...out Java, especially for large molecules (for example, the [[Ribosome]]).
    8: ...a is reported in the line ''JmolExtension'' at [[Special:Version]] in the column ''(now loaded Jmol v...
    10: ===Proteopedia status===
    11: ...gal, China, Finland, Chile, Brazil, Netherlands, Spain and Sweden.
  12. Topic page (37 bytes)
    1: #REDIRECT [[Proteopedia:Topic Pages]]
  13. Image:1B9C for group Page.jpg (33 bytes)
    1: This is a jpg of our 1b9c mutant.
  14. User:Jaime Prilusky/Workbench/Template Featured Page (188 bytes)
    3: |PAGENAME=HereTheActualPagename
    5: |SCENE=12/3456/Sample/1
    10: <!-- name as Proteopedia:Featured_article/0 -->
  15. Image:Page 1 (1).jpg (0 bytes)
  16. Image:Page 2.jpg (0 bytes)
  17. User:Lauren Le Page (225 bytes)
    1: * Full Real Name:Lauren Le Page
    3: * Position: Student
    7: * City, State/Province, Country: Amherst, MA
    9: * Field of Expertise or Study: Animal Biotechnology
  18. Proteopedia:Page of the Year 2009 (3,700 bytes)
    2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
    3: [[Image:Proteopedia_mug.jpeg|right|200px]]
    5: ...and enjoyed reading your pages during the judging process!
    7: ...y [http://www.idigital.co.il iDigital], Apple's representatives in Israel.
    9: ...-coveted Proteopedia Mugs to each of the runners-up as well as to the winner!
  19. User:Eran Hodis/Sandbox Main Page (6,946 bytes)
    1: ...e="width:100%; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
    4: ...top:0.5em; padding-left:30.0px;">Welcome to Proteopedia,</div>
    5: ....0px;">The free, collaborative 3D encyclopedia of proteins &amp; other molecules</div>
    7: <table width="100%" colspan="2">
    9: ... <font color="blue">•</font> [[Help:Contents|Help]]</td>
  20. Proteopedia:How to Make a Page (11,379 bytes)
    1: ...oved, it represents most of the points on quality page creation listed below).
    5: ...ng to the [[Help:Editing|editing help]] reference pages.
    7: ==Creating the page==
    9: ...opic (generally: a protein, a molecule, or a concept)
    10: # check that a page on your topic doesn't exist already by using:

Page text matches

  1. Main Page 20190127 (6,331 bytes)
    2: <div style="font-size:1.5em;border:1px solid #ddd;background-color:yellow;">Server main...
    3: Proteopedia will be down for infrastructure maintenance f...
    7: ...not be possible to create new userIDs during this period.
    10: <!--Banner Across Top of Page-->
    11: ...5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;"
  2. Telomerase Reverse Transcriptase (5,665 bytes)
    1: ...merase Reverse Transcriptase of Tetrahymena Thermophila''' ==
    6: ...oprotein enzyme. It adds specific telomeric DNA repeats to the 3'ends of linear chromosomes.
    7: ...tion of the '''TR''' subunit is to provide the template for telomeric DNA synthesis, which is done by...
    8: ...''TERT essential N-terminal (TEN) domain'''. <ref>PMID: 16462747</ref>
    10: ...ng of the RNA subunit is possible, because of the presence of TEN in TERTs.
  3. Help:Editing (24,612 bytes)
    1: <center><table style='background:#ffd8d8;' cellpadding='6'><tr><td>
    2: ...Video Guide|Video Guides]], and the main [[Help]] Page.
    5: ==<big>Help with Wikitext Syntax</big>==
    6: ...e help reference dealing with wikitext, and Proteopedia uses the same wiki software.
    9: ==Use Sandboxes for practice editing==
  4. Acetylcholinesterase (8,905 bytes)
    1: ...che_with_ach/2' caption='Torpedo california AChE (PDB code [[2ace]])'>
    2: [[Image:small_wh_ray0001.gif|left|150px]]<br />
    3: ...rus (OP) poisons is attributed primarily to their potent AChE inhibitors.
    8: ...reatment of [http://en.wikipedia.org/wiki/Protein proteins], such as
    9: ... site-directed mutagenesis], utilizing suitable expression systems.
  5. NADPH oxidase 3D structures (1,568 bytes)
    1: ==3D structures of NADPH oxidase==
    3: Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMO...
    4: {{#tree:id=OrganizedByTopic|openlevels=0|
    6: *Neutrophil cytosol factor 1 or p47phox
    9: **[[1kq6]], [[1o7k]] – hNCF1 PX domain 1-123<br />
  6. Ferredoxin NADP+ Reductase 3D structures (3,803 bytes)
    1: ...al description of the protein see [[Ferredoxin_NADP+ Reductase]]
    2: {{#tree:id=OrganizedByTopic|openlevels=0|
    6: **[[1frn]], [[1fnb]] - spFNR – spinach<br />
    7: **[[1bx0]], [[1bx1]], [[1frq]] – spFNR (mutant)<br />
    8: **[[2xnc]], [[1qg0]] – pFNR - pea<br />
  7. Hemoglobin (21,535 bytes)
    1: ...ght' caption="Human Hemoglobin α chain (grey and pink) β chain (green and yellow) with bound O2 [[1...
    3: ...ithheme/5'>contains a heme</scene> prosthetic group. The <scene name='Hemoglobin/4heme/3'>heme molecu...
    5: ...nated heme group is held</scene> within the polypeptide.
    7: ...e buried among the hydrophobic amino acids of the protein.
    9: ...wn disease caused by a mutation in the hemoglobin protein is sickle-cell anemia. It results from a m...
  8. Ann Taylor/Hemoglobin (7,678 bytes)
    1: ...ght' caption="Human Hemoglobin α chain (grey and pink) β chain (green and yellow) with bound O2 [[1...
    2: ...ithheme/5'>contains a heme</scene> prosthetic group. The <scene name='Hemoglobin/4heme/3'>heme molecu...
    4: ...cene name='57/576710/Oxy_fe_planarity/2'>into the plane</scene> of the heme.
    6: ...re undergoes some but not all of these changes, depending on conditions. <jmol><jmolButton>
    7: ...used; else; anim resume; set echo off;endif;</script>
  9. CHEM2052 Tutorial (6,397 bytes)
    1: ..._chymotrypsin-triad/2' caption='α-chymoptrypsin (PDB code [[2cha]])'>
    2: == '''Chem2052: Example 3 - Serine Proteases''' ==
    4: ...n biochemistry and molecular biology to ascertain protein sequences.
    6: ...efully see why serine proteases are a classic example of how '''''structure dictates function'''''!
    8: ...zmann/Sandbox_5/New_chymotrypsin-triad/2'>Chymotrypsin</scene>
  10. User:Wayne Decatur/Sandboxsurffade (1,352 bytes)
    3: ...sky, this has been copied to [[Proteopedia:DIY:Templates]]
    6: ...ight' caption='.' scene='60/607777/Surf_test/1' pspeed='8' />
    9: ===Template Versions Ready to Use Anywhere Easily===
    30: ===Code in Page Versions===
    34: <script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {iso...
  11. User:Jessica Sheehe (324 bytes)
    3: * Position: Graduate Student
    7: * City, State/Province, Country: Burlington, VT USA
    9: ...proteopedia page for a class project under Dr. Stephen Everse.
  12. Help:Contents (6,488 bytes)
    2: ...ological molecules. This is the directory of help pages for visitors and for registered users.
    8: ...i class="fas fa-directions"></i> Navigating Proteopedia===
    9: ...ab). This is a way to browse entries on related topics.
    11: |valign="top" |
    14: ...[[About Macromolecular Structure]] page is a good place to start.
  13. Proteopedia:About (7,060 bytes)
    4: ==[[Proteopedia:Overview|Overview of Proteopedia]]==
    5: ...troduces Purpose, History, Unique Capabilities, Types of Contents, and Usage Statistics. More details...
    7: ==Proteopedia Mission Statement==
    8: ...ce as a '''free, collaborative 3D-encyclopedia of proteins &amp; other biomolecules.'''
    10: ==Goals for Proteopedia==
  14. Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
    1: ...hionine, phosphate, Ca+2 (green) and Zn+2 (grey) (PDB code [[1xjo]])'>
    3: ...rtoon.png |left| 200px | thumb | S griseus aminopeptidase, showing overall fold. Zinc ions are dark ...
    4: == ''Streptomyces griseus'' Aminopeptidase (SGAP) ==
    7: ...eucine. No cleavage occurs if the next residue is proline.
    9: ... | left | thumb| 500px | Reaction catalyzed by SGAP; scissile bond is shown in red.]]
  15. Scene authoring tools (23,035 bytes)
    1: ...h the introductory videos, e.g. [https://youtu.be/P-LsB2U8rNM].
    4: [[Image:SAT show.JPG|350px]]
    6: ...t that includes these tags, but this page for example does not.
    11: ...ght' caption='Insert caption here' scene='Insert optional scene name here' />
    12: ...viewed here: http://www.weizmann.ac.il/ISPC/Proteopedia.html.
  16. Proteopedia (23 bytes)
    1: #REDIRECT [[Main Page]]
  17. Sandbox 781 (8,140 bytes)
    1: =Crystal structure of MraY bound to carbacaprazamycin, 6OYH =
    3: ... unit</scene> ((6OYH))' size='340' side='right' caption='Crystal structure of two MraY dimers'>
    9: ...A) in complex with carbacaprazamycin.MraYAA was expressed in ''Escherichia coli''.
    11: == Carbacaprazamycin ==
    13: ...itors contains a uridine moiety <ref name="seven">PMID:31266949</ref>
  18. User:Jaime Prilusky/page'quote (322 bytes)
    1: A page with a single quote character in the name
    2: ...ght' caption='Insert caption here' scene='Insert optional scene name here' />
    3: ...User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
    4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene>
  19. User:Karsten Theis/Rigid body interpolation (4,709 bytes)
    1: ...positions and to create morph, see [[Jmol/Storymorph]].
    3: This page shows a way to superpose two rigid bodies so that they both have the sa...
    5: ...ters and then reset the coordinates. The starting point is a structure with two models containing the...
    9: * Linear interpolation of coordinates in the atom sets sel1 and s...
    10: * @param {atom set} sel1 First set of atoms, will be m...
  20. 1dyw (4,962 bytes)
    2: ...uctural characterization of a divergent loop cyclophilin from Caenorhabditis elegans==
    3: ...ctureSection load='1dyw' size='340' side='right'caption='[[1dyw]], [[Resolution|resolution]] 1.80&amp;Ari...
    5: ...n the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DYW FirstGlance]. <br>
    6: ...</tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockD...
    7: ...h-its.org/prosat/prosatexe?pdbcode=1dyw ProSAT]</span></td></tr>

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