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- Main Page 20190127 (6,331 bytes)
2: ...ackground-color:yellow;">Server maintenance warning:<br>
3: ...l Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
7: ...not be possible to create new userIDs during this period.
10: <!--Banner Across Top of Page-->
11: ...5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;" - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
2: ...ght' caption='Insert caption here' scene='Insert optional scene name here' />
3: ...User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - Main Page Static (1,585 bytes)
1: [[Image:1eve_Static.png|right|400px]]<br />
2: <big>Welcome to Proteopedia,</big>
4: The collaborative, 3D encyclopedia of proteins and other molecules.
6: ...: yellow;color:darkred;font-weight:bold;padding:10px;">
7: ...ecules in Proteopedia. Please download Java at http://www.java.com - Category:Page RC (38 bytes)
1: List of pages with the keyword Page RC - Proteopedia Page Contributors and Editors (1,834 bytes)
1: Proteopedia grows through an ongoing community effort.
3: ...the real names of those who have been directly responsible for what you are
4: ...in names of users whose contributions have been replaced or removed.
6: ...priate credit for their contributions and take responsibility for their entries.
8: ==Content Donors ''vs'' Proteopedia Page Contributors and Editors== - Proteopedia:Page of the Year Competition (3,357 bytes)
2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
3: [[Image:Proteopedia_mug.jpeg|right|200px]]
5: ...ompetition'''! Could your page be '''''the best page'''''?
7: ...dit pages in Proteopedia, and continue contributing in the future.
9: <font color='red'>The competition ends on December 31, 2009.</font> - Proteopedia:Page of the Year Entrants (2,819 bytes)
1: ...Year Competition]] here. You can enter as many pages as you like.
2: ...then a link to the page you're entering in the competition.
8: ...ust an example, Eran cannot participate in the competition.
12: # [[User:Sara Toftegaard Petersen]] [[User:Mathilde Thomsen]] [[User:Mette T...
13: ...yne Decatur]] -- [[Ribosome]] (see history for original article as of October 15, 2009) - Proteopedia:Page of the Year Competition 2009 Winners (88 bytes)
1: ...nners of the Proteopedia 2009 Page of the Year Competition will be announced here. - Proteopedia:Main page develop (7,341 bytes)
1: ...; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
4: ...top:0.5em; padding-left:30.0px;">Welcome to Proteopedia,</div>
5: ....0px;">The free, collaborative 3D encyclopedia of proteins & other molecules</div>
7: <table width="100%" colspan="2">
9: ... <font color="blue">•</font> [[Help:Contents|Help]]</td> - Main Page News (1,960 bytes)
2: ===Proteopedia on iPads!===
3: ...out Java, especially for large molecules (for example, the [[Ribosome]]).
4: ... you can achieve faster, smoother rotation by using Java: see
5: ...a_for_Rendering_Structures|using Java for rendering structures]].
7: ===What version of Jmol is running?=== - Image:1B9C for group Page.jpg (33 bytes)
1: This is a jpg of our 1b9c mutant. - User:Jaime Prilusky/Workbench/Template Featured Page (188 bytes)
3: |PAGENAME=HereTheActualPagename
5: |SCENE=12/3456/Sample/1
10: <!-- name as Proteopedia:Featured_article/0 --> - Image:Page 1 (1).jpg (0 bytes)
- Image:Page 2.jpg (0 bytes)
- User:Lauren Le Page (225 bytes)
1: * Full Real Name:Lauren Le Page
3: * Position: Student
7: * City, State/Province, Country: Amherst, MA
9: * Field of Expertise or Study: Animal Biotechnology - Proteopedia:Page of the Year 2009 (3,700 bytes)
2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
3: [[Image:Proteopedia_mug.jpeg|right|200px]]
5: ...and enjoyed reading your pages during the judging process!
7: ...y [http://www.idigital.co.il iDigital], Apple's representatives in Israel.
9: ...-coveted Proteopedia Mugs to each of the runners-up as well as to the winner! - User:Eran Hodis/Sandbox Main Page (6,946 bytes)
1: ...; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
4: ...top:0.5em; padding-left:30.0px;">Welcome to Proteopedia,</div>
5: ....0px;">The free, collaborative 3D encyclopedia of proteins & other molecules</div>
7: <table width="100%" colspan="2">
9: ... <font color="blue">•</font> [[Help:Contents|Help]]</td> - Proteopedia:How to Make a Page (11,379 bytes)
1: ...ed, it represents most of the points on quality page creation listed below).
3: ==Before you begin==
5: ... to the [[Help:Editing|editing help]] reference pages.
7: ==Creating the page==
9: ...opic (generally: a protein, a molecule, or a concept) - User:Jaime Prilusky/Sandbox Main Page (5,009 bytes)
1: <!--Banner Across Top of Page-->
2: ...5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;"
6: {| style="width:280px; border:none; background:none;"
7: ..."width:280px; text-align:center; white-space:nowrap; color:#000;" |
8: ...n:0; padding:0.3em; color:#000;">Welcome to Proteopedia</div> - Category:Page AN (38 bytes)
1: List of pages with the keyword Page AN
Page text matches
- Main Page 20190127 (6,331 bytes)
2: ...ackground-color:yellow;">Server maintenance warning:<br>
3: ...l Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
7: ...not be possible to create new userIDs during this period.
10: <!--Banner Across Top of Page-->
11: ...5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;" - Telomerase Reverse Transcriptase (5,665 bytes)
1: ...merase Reverse Transcriptase of Tetrahymena Thermophila''' ==
6: ...oprotein enzyme. It adds specific telomeric DNA repeats to the 3'ends of linear chromosomes.
7: ...tion of the '''TR''' subunit is to provide the template for telomeric DNA synthesis, which is done by...
8: ...''TERT essential N-terminal (TEN) domain'''. <ref>PMID: 16462747</ref>
10: ...ng of the RNA subunit is possible, because of the presence of TEN in TERTs. - Help:Editing (24,612 bytes)
1: ...nter><table style='background:#ffd8d8;' cellpadding='6'><tr><td>
2: ...deo Guide|Video Guides]], and the main [[Help]] Page.
5: ==<big>Help with Wikitext Syntax</big>==
6: ...e help reference dealing with wikitext, and Proteopedia uses the same wiki software.
9: ==Use Sandboxes for practice editing== - Acetylcholinesterase (8,905 bytes)
1: ...che_with_ach/2' caption='Torpedo california AChE (PDB code [[2ace]])'>
2: [[Image:small_wh_ray0001.gif|left|150px]]<br />
3: ...rus (OP) poisons is attributed primarily to their potent AChE inhibitors.
8: ...reatment of [http://en.wikipedia.org/wiki/Protein proteins], such as
9: ... site-directed mutagenesis], utilizing suitable expression systems. - NADPH oxidase 3D structures (1,568 bytes)
1: ==3D structures of NADPH oxidase==
3: Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMO...
4: {{#tree:id=OrganizedByTopic|openlevels=0|
6: *Neutrophil cytosol factor 1 or p47phox
8: **[[1ng2]], [[1uec]] – hNCF1 SH3 domain 151-340 - human... - Ferredoxin NADP+ Reductase 3D structures (4,378 bytes)
1: ...al description of the protein see [[Ferredoxin_NADP+ Reductase]]
2: {{#tree:id=OrganizedByTopic|openlevels=0|
6: **[[1frn]], [[1fnb]] - spFNR – spinach<br />
7: **[[1bx0]], [[1bx1]], [[1frq]] – spFNR (mutant)<br />
8: **[[2xnc]], [[1qg0]] – pFNR - pea<br /> - Hemoglobin (19,366 bytes)
1: ...en and yellow) with bound O2 [[1gzx]]" scene="Hemoglobin/Foursubunits/5" >
3: ...n-transport protein. Hemoglobin is an allosteric protein. It is a <jmol>
5: ... <script> script /scripts/32/32/Subunits_1hho/1.spt;
6: center visible;</script>
9: ...moglobin/4heme/3'>heme molecules</scene> give hemoglobin its red color. - Ann Taylor/Hemoglobin (7,712 bytes)
1: ...ellow) with bound O2 [[1gzx]]" scene="Hemoglobin/1gzx/2" >
2: ...moglobin/4heme/3'>heme molecules</scene> give hemoglobin its red color.
4: ...cene name='57/576710/Oxy_fe_planarity/3'>into the plane</scene> of the heme.
6: ...ergoes some but not all of these changes, depending on conditions. <jmol><jmolButton>
7: ...used; else; anim resume; set echo off;endif;</script> - CHEM2052 Tutorial (6,397 bytes)
1: ..._chymotrypsin-triad/2' caption='α-chymoptrypsin (PDB code [[2cha]])'>
2: == '''Chem2052: Example 3 - Serine Proteases''' ==
4: ...n biochemistry and molecular biology to ascertain protein sequences.
6: ...efully see why serine proteases are a classic example of how '''''structure dictates function'''''!
8: ...zmann/Sandbox_5/New_chymotrypsin-triad/2'>Chymotrypsin</scene> - User:Wayne Decatur/Sandboxsurffade (1,352 bytes)
3: ...sky, this has been copied to [[Proteopedia:DIY:Templates]]
5: ==Testing Surface fade==
6: ...ight' caption='.' scene='60/607777/Surf_test/1' pspeed='8' />
9: ===Template Versions Ready to Use Anywhere Easily===
15: {{Link Toggle FancyCartoonHighQualityView}} - User:Jessica Sheehe (324 bytes)
3: * Position: Graduate Student
7: * City, State/Province, Country: Burlington, VT USA
9: ...proteopedia page for a class project under Dr. Stephen Everse. - Help:Contents (6,518 bytes)
2: ...he directory of help pages for visitors and for registered users.
8: ...i class="fas fa-directions"></i> Navigating Proteopedia===
9: ...ab). This is a way to browse entries on related topics.
11: |valign="top" |
13: ...=<i class="fas fa-glasses"></i> Reading and viewing entries=== - Proteopedia:About (7,060 bytes)
4: ==[[Proteopedia:Overview|Overview of Proteopedia]]==
5: ...y, Unique Capabilities, Types of Contents, and Usage Statistics. More details follow below.
7: ==Proteopedia Mission Statement==
8: ...ce as a '''free, collaborative 3D-encyclopedia of proteins & other biomolecules.'''
10: ==Goals for Proteopedia== - Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
1: ...hionine, phosphate, Ca+2 (green) and Zn+2 (grey) (PDB code [[1xjo]])'>
3: ...tidase, showing overall fold. Zinc ions are dark grey, calcium ion is white.]]
4: == ''Streptomyces griseus'' Aminopeptidase (SGAP) ==
6: ==Biological function==
7: ...eucine. No cleavage occurs if the next residue is proline. - Scene authoring tools (23,035 bytes)
1: ...h the introductory videos, e.g. [https://youtu.be/P-LsB2U8rNM].
3: ==Where are the ''Scene authoring tools''?==
4: [[Image:SAT show.JPG|350px]]
6: ...t that includes these tags, but this page for example does not.
11: ...ght' caption='Insert caption here' scene='Insert optional scene name here' /> - Sandbox 781 (8,140 bytes)
1: =Crystal structure of MraY bound to carbacaprazamycin, 6OYH =
3: ... unit</scene> ((6OYH))' size='340' side='right' caption='Crystal structure of two MraY dimers'>
9: ...A) in complex with carbacaprazamycin.MraYAA was expressed in ''Escherichia coli''.
11: == Carbacaprazamycin ==
13: ...itors contains a uridine moiety <ref name="seven">PMID:31266949</ref> - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
2: ...ght' caption='Insert caption here' scene='Insert optional scene name here' />
3: ...User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - User:Karsten Theis/Rigid body interpolation (4,709 bytes)
1: ...positions and to create morph, see [[Jmol/Storymorph]].
3: ...slated such that a common anchor (center of mass, given atom) is in the same location.
5: ...ing point is a structure with two models containing the same atoms in the same order, but with differ...
9: * Linear interpolation of coordinates in the atom sets sel1 and s...
10: * @param {atom set} sel1 First set of atoms, will be m... - 1dyw (4,962 bytes)
2: ...divergent loop cyclophilin from Caenorhabditis elegans==
3: ...ion='[[1dyw]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
4: == Structural highlights ==
5: ...https://proteopedia.org/fgij/fg.htm?mol=1DYW FirstGlance]. <br>
6: ...r id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="... - User:Anna Leibinger/Sandbox 1 (11,577 bytes)
1: ...'' to modify. Be careful with the &lt; and &gt; signs.
2: ...7</ref> to the --[[User:Anna Leibinger|Anna Leibinger]] 14:55, 1 June 2024 (UTC)
8: SH3 domain in Bin1 protein
16: ...ways, notably those involved in cancer and neurodegenerative diseases.
20: =''' Structure of the SH3 site of Protein Bin1=
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