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- Main Page 20190127 (6,331 bytes)
2: ...;background-color:yellow;">Server maintenance warning:<br>
3: ...day, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
4: </div>
7: ... be possible to create new userIDs during this period.
8: </div> - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
2: ...t' caption='Insert caption here' scene='Insert optional scene name here' />
3: ...='User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - Main Page Static (1,585 bytes)
1: [[Image:1eve_Static.png|right|400px]]<br />
2: <big>Welcome to Proteopedia,</big>
4: The collaborative, 3D encyclopedia of proteins and other molecules.
6: ...-color: yellow;color:darkred;font-weight:bold;padding:10px;">
7: ...red in order to view the 3D molecules in Proteopedia. Please download Java at http://www.java.com - Proteopedia:Best Page Competition (54 bytes)
1: #REDIRECT [[Proteopedia:Page of the Year Competition]] - Category:Page RC (38 bytes)
1: List of pages with the keyword Page RC - Proteopedia Page Contributors and Editors (1,834 bytes)
1: Proteopedia grows through an ongoing community effort.
3: ...real names of those who have been directly responsible for what you are
4: ...ionally may contain names of users whose contributions have been replaced or removed.
6: ...ntributions and take responsibility for their entries.
8: ...Donors ''vs'' Proteopedia Page Contributors and Editors== - Proteopedia:Page of the Year Competition (3,357 bytes)
2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
3: [[Image:Proteopedia_mug.jpeg|right|200px]]
5: ... Competition'''! Could your page be '''''the best page'''''?
7: ...t pages in Proteopedia, and continue contributing in the future.
9: <font color='red'>The competition ends on December 31, 2009.</font> - Proteopedia:Page of the Year Entrants (2,819 bytes)
1: ...tion]] here. You can enter as many pages as you like.
2: ...a link to the page you're entering in the competition.
8: ...n example, Eran cannot participate in the competition.
10: ...[User:Eran Hodis]] -- [[User:Eran_Hodis/Acetylcholinesterase]]
11: # [[User:Ramiro Barrantes]] -- [[1tdh]] - Proteopedia:Page of the Year Competition 2009 Winners (88 bytes)
1: ...he Proteopedia 2009 Page of the Year Competition will be announced here. - Proteopedia:Main page develop (7,341 bytes)
1: ...|style="width:100%; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
4: ...; padding-left:30.0px;">Welcome to Proteopedia,</div>
5: ...e 3D encyclopedia of proteins & other molecules</div>
7: <table width="100%" colspan="2">
9: ... <font color="blue">•</font> [[Help:Editing|Editing]] <font color="blue">•</font> [[Help:Contents... - Main Page News (1,960 bytes)
2: ===Proteopedia on iPads!===
3: ...pecially for large molecules (for example, the [[Ribosome]]).
4: ...g, you can achieve faster, smoother rotation by using Java: see
5: ...ava_for_Rendering_Structures|using Java for rendering structures]].
7: ===What version of Jmol is running?=== - Topic page (37 bytes)
1: #REDIRECT [[Proteopedia:Topic Pages]] - Image:1B9C for group Page.jpg (33 bytes)
1: This is a jpg of our 1b9c mutant. - User:Jaime Prilusky/Workbench/Template Featured Page (188 bytes)
1: {{Featured article
2: |TITLE=HereTheTitle
3: |PAGENAME=HereTheActualPagename
10: <!-- name as Proteopedia:Featured_article/0 --> - Image:Page 1 (1).jpg (0 bytes)
- Image:Page 2.jpg (0 bytes)
- User:Lauren Le Page (225 bytes)
1: * Full Real Name:Lauren Le Page
3: * Position: Student
5: * Institution (NO ABBREVIATIONS): University of Massachusetts Amherst
7: * City, State/Province, Country: Amherst, MA
9: * Field of Expertise or Study: Animal Biotechnology - Proteopedia:Page of the Year 2009 (3,700 bytes)
2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
3: [[Image:Proteopedia_mug.jpeg|right|200px]]
5: ...ges and enjoyed reading your pages during the judging process!
7: ...gital.co.il iDigital], Apple's representatives in Israel.
9: ...Mugs to each of the runners-up as well as to the winner! - User:Eran Hodis/Sandbox Main Page (6,946 bytes)
1: ...|style="width:100%; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
4: ...; padding-left:30.0px;">Welcome to Proteopedia,</div>
5: ...e 3D encyclopedia of proteins & other molecules</div>
7: <table width="100%" colspan="2">
9: ... <font color="blue">•</font> [[Help:Editing|Editing]] <font color="blue">•</font> [[Help:Contents... - Proteopedia:How to Make a Page (11,379 bytes)
1: ...ents most of the points on quality page creation listed below).
3: ==Before you begin==
5: ...ng to the [[Help:Editing|editing help]] reference pages.
7: ==Creating the page==
9: # choose your topic (generally: a protein, a molecule, or a concept)
Page text matches
- Main Page 20190127 (6,331 bytes)
2: ...;background-color:yellow;">Server maintenance warning:<br>
3: ...day, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
4: </div>
7: ... be possible to create new userIDs during this period.
8: </div> - Telomerase Reverse Transcriptase (5,665 bytes)
1: ...rase Reverse Transcriptase of Tetrahymena Thermophila''' ==
4: == '''Introduction''' ==
6: ... specific telomeric DNA repeats to the 3'ends of linear chromosomes.
7: ...e the template for telomeric DNA synthesis, which is done by the TERT.
8: ...TERT essential N-terminal (TEN) domain'''. <ref>PMID: 16462747</ref> - Help:Editing (24,612 bytes)
1: ...center><table style='background:#ffd8d8;' cellpadding='6'><tr><td>
2: ...Video Guide|Video Guides]], and the main [[Help]] Page.
5: ==<big>Help with Wikitext Syntax</big>==
6: ...g with wikitext, and Proteopedia uses the same wiki software.
9: ==Use Sandboxes for practice editing== - Acetylcholinesterase (8,905 bytes)
1: ...='22/22/Ache_with_ach/2' caption='Torpedo california AChE (PDB code [[2ace]])'>
2: [[Image:small_wh_ray0001.gif|left|150px]]<br />
3: ...is attributed primarily to their potent AChE inhibitors.
5: See also [[Acetylcholinesterase (Hebrew)]]
7: == Key Enzyme in the Nervous System == - NADPH oxidase 3D structures (1,568 bytes)
1: ==3D structures of NADPH oxidase==
3: ...SIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
4: {{#tree:id=OrganizedByTopic|openlevels=0|
6: *Neutrophil cytosol factor 1 or p47phox
8: **[[1ng2]], [[1uec]] – hNCF1 SH3 domain 151-340 - human<br /> - Ferredoxin NADP+ Reductase 3D structures (3,803 bytes)
1: ... general description of the protein see [[Ferredoxin_NADP+ Reductase]]
2: {{#tree:id=OrganizedByTopic|openlevels=0|
6: **[[1frn]], [[1fnb]] - spFNR – spinach<br />
10: **[[1sm4]] - FNR – paprika<br />
11: ...[3lxd]] – FNR ARR – ''Novosphingobium aromaticivorans''<br /> - Hemoglobin (21,535 bytes)
1: ...ith bound O2 [[1gzx]]" scene="Hemoglobin/Foursubunits/5" >
2: == Function ==
3: ...n/4heme/3'>heme molecules</scene> give hemoglobin its red color.
5: ...ted heme group is held</scene> within the polypeptide.
7: ...ied among the hydrophobic amino acids of the protein. - Ann Taylor/Hemoglobin (7,678 bytes)
1: ...nd yellow) with bound O2 [[1gzx]]" scene="Hemoglobin/1gzx/2" >
2: ...n/4heme/3'>heme molecules</scene> give hemoglobin its red color.
4: ...moving <scene name='57/576710/Oxy_fe_planarity/2'>into the plane</scene> of the heme.
6: ... but not all of these changes, depending on conditions. <jmol><jmolButton>
7: ...aused; else; anim resume; set echo off;endif;</script> - CHEM2052 Tutorial (6,397 bytes)
1: .../New_chymotrypsin-triad/2' caption='α-chymoptrypsin (PDB code [[2cha]])'>
2: == '''Chem2052: Example 3 - Serine Proteases''' ==
4: ...chemistry and molecular biology to ascertain protein sequences.
6: ...assic example of how '''''structure dictates function'''''!
8: ...ann/Sandbox_5/New_chymotrypsin-triad/2'>Chymotrypsin</scene> - User:Wayne Decatur/Sandboxsurffade (1,352 bytes)
3: ... Prilusky, this has been copied to [[Proteopedia:DIY:Templates]]
5: ==Testing Surface fade==
6: ...e here' size='350' frame='true' align='right' caption='.' scene='60/607777/Surf_test/1' pspeed='8' />
9: ===Template Versions Ready to Use Anywhere Easily===
11: {{Link FadeSurfaceBasic}} (basic) - User:Jessica Sheehe (324 bytes)
1: * Full Real Name: Jessica Sheehe
3: * Position: Graduate Student
5: * Institution (NO ABBREVIATIONS): University of Vermont
7: * City, State/Province, Country: Burlington, VT USA
9: ...ertise or Study: I will be creating a proteopedia page for a class project under Dr. Stephen Everse. - Help:Contents (6,488 bytes)
2: ...e directory of help pages for visitors and for registered users.
6: |style="width: 50%;" |
8: ...lass="fas fa-directions"></i> Navigating Proteopedia===
9: ...b). This is a way to browse entries on related topics.
11: |valign="top" | - Proteopedia:About (7,060 bytes)
1: <div class="toclimit-2">
3: </div>
4: ==[[Proteopedia:Overview|Overview of Proteopedia]]==
5: ...Types of Contents, and Usage Statistics. More details follow below.
7: ==Proteopedia Mission Statement== - Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
1: ...ight' scene= caption='SGAP complex with oxymethionine, phosphate, Ca+2 (green) and Zn+2 (grey) (PDB c...
3: ... fold. Zinc ions are dark grey, calcium ion is white.]]
4: == ''Streptomyces griseus'' Aminopeptidase (SGAP) ==
6: ==Biological function==
7: ...ne. No cleavage occurs if the next residue is proline. - Scene authoring tools (23,035 bytes)
1: ...ne Authoring Tools]], and watch the introductory videos, e.g. [https://youtu.be/P-LsB2U8rNM].
3: ==Where are the ''Scene authoring tools''?==
4: [[Image:SAT show.JPG|350px]]
6: ...holder content that includes these tags, but this page for example does not.
11: ...t' caption='Insert caption here' scene='Insert optional scene name here' /> - Proteopedia (23 bytes)
1: #REDIRECT [[Main Page]] - Sandbox 781 (8,140 bytes)
1: ...Crystal structure of MraY bound to carbacaprazamycin, 6OYH =
3: ...e='right' caption='Crystal structure of two MraY dimers'>
6: = Introduction =
9: ...azamycin.MraYAA was expressed in ''Escherichia coli''.
11: == Carbacaprazamycin == - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
2: ...t' caption='Insert caption here' scene='Insert optional scene name here' />
3: ...='User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - User:Karsten Theis/Rigid body interpolation (4,709 bytes)
1: ... the Storymorph Jmol scrips to perform supoerpositions and to create morph, see [[Jmol/Storymorph]].
3: ... (center of mass, given atom) is in the same location.
5: ... atoms in the same order, but with different coordinates.
7: <nowiki>
9: * Linear interpolation of coordinates in the atom sets sel1 and sel2 - 1dyw (4,962 bytes)
2: ... of a divergent loop cyclophilin from Caenorhabditis elegans==
3: ...ption='[[1dyw]], [[Resolution|resolution]] 1.80Å' scene=''>
4: == Structural highlights ==
5: ...se [https://proteopedia.org/fgij/fg.htm?mol=1DYW FirstGlance]. <br>
6: ...methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr>
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