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- Main Page 20190127 (6,331 bytes)
3: ...00am EDT (Eastern Daylight Time USA) till Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time US...
7: ...wse the current pages, but creation or editing of pages will be disabled, and it will not be possible to...
10: <!--Banner Across Top of Page-->
35: ...opedia Do For You" style="padding:2px 5px;">{{MainPageWCPDFU}}</div>
40: ...padding:2px 5px;" | <div id="News">{{Template:MainPageNews}}</div> - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
3: <scene name='User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - Main Page Static (1,585 bytes)
7: ...n Proteopedia. Please download Java at http://www.java.com
10: <big>''Here's an excerpt from one of our pages:''</big>
15: ...page because your computer is most likely missing Java.
16: ...lp for enabling Java in your computer and start enjoying Proteopedia's features. - Proteopedia:Best Page Competition (54 bytes)
1: #REDIRECT [[Proteopedia:Page of the Year Competition]] - Category:Page RC (38 bytes)
1: List of pages with the keyword Page RC - Proteopedia Page Contributors and Editors (1,834 bytes)
3: The [[Proteopedia Page Contributors and Editors]] section contains the r...
4: seeing on the page, by editing it as logged-in users. The list of na...
6: Page editors both receive appropriate credit for their...
8: ==Content Donors ''vs'' Proteopedia Page Contributors and Editors==
9: ... to the page, may have never seen the Proteopedia page itself. - Proteopedia:Page of the Year Competition (3,357 bytes)
3: [[Image:Proteopedia_mug.jpeg|right|200px]]
5: ... Competition'''! Could your page be '''''the best page'''''?
7: ...hors will see just how fun and easy it is to edit pages in Proteopedia, and continue contributing in the...
11: ...etition have been announced:</font> [[Proteopedia:Page of the Year 2009|here]]
14: The winner of the Proteopedia Best Page Competition will receive a [http://www.apple.com/... - Proteopedia:Page of the Year Entrants (2,819 bytes)
1: ...e Year Competition]] here. You can enter as many pages as you like.
2: ...page followed by 2 hyphens and then a link to the page you're entering in the competition.
8: Entry number 1 is just an example, Eran cannot participate in the com...
18: ...-GMP signaling]] (Note that there are several sub-pages)
19: # [[User:Joseph Lipsick]] -- [[SRC]] - Proteopedia:Page of the Year Competition 2009 Winners (88 bytes)
1: The winners of the Proteopedia 2009 Page of the Year Competition will be announced here. - Proteopedia:Main page develop (7,341 bytes)
10: ...t> [[Proteopedia:Interesting_Pages|Content (Topic Pages)]] <font color="blue">•</font> [[Proteopedia:W...
22: ... size='300' frame='false' scene='Proteopedia:Main_page_develop/2q66_initial/3' />
57: * All [[PDB]] entries (over 54,000) have pages
65: * ''Go'' takes you directly to the page if it exists,
88: <div align="center">Pages are easy to create and edit, and <font color='gr... - Main Page News (1,960 bytes)
3: ...ot installed. However, rotation is slower without Java, especially for large molecules (for example, ...
4: ...ou can achieve faster, smoother rotation by using Java: see
5: [[Using_Java_for_Rendering_Structures|using Java for rendering structures]].
7: ===What version of Jmol is running?===
8: ...t [[Special:Version]] in the column ''(now loaded Jmol version .....)''. - Topic page (37 bytes)
1: #REDIRECT [[Proteopedia:Topic Pages]] - Image:1B9C for group Page.jpg (33 bytes)
1: This is a jpg of our 1b9c mutant. - User:Jaime Prilusky/Workbench/Template Featured Page (188 bytes)
3: |PAGENAME=HereTheActualPagename
6: |BELOW_JMOL= - Image:Page 1 (1).jpg (0 bytes)
- Image:Page 2.jpg (0 bytes)
- User:Lauren Le Page (225 bytes)
1: * Full Real Name:Lauren Le Page - Proteopedia:Page of the Year 2009 (3,700 bytes)
3: [[Image:Proteopedia_mug.jpeg|right|200px]]
5: ...e pages and enjoyed reading your pages during the judging process!
13: The Grand Prize is awarded equally to four pages, by [[User:Wayne Decatur|Wayne Decatur]]
22: :(these 3 pages are organized into a higher-level page [http://www.proteopedia.org/wiki/index.php?title=...
25: Five runner-up prizes were awarded to seven pages, - User:Eran Hodis/Sandbox Main Page (6,946 bytes)
10: ...t> [[Proteopedia:Interesting_Pages|Content (Topic Pages)]] <font color="blue">•</font> [[Proteopedia:W...
17: ...e:</font> Convert PyMOL session files (.pse) into Jmol scenes in Proteopedia!</div>
22: ...out the [[PyMOL2Jmol Translator|Proteopedia PyMOL2Jmol Translator]] (beta). To use it you may need to...
54: * All [[PDB]] entries (over 58,000) have pages
62: * ''Go'' takes you directly to the page if it exists, - Proteopedia:How to Make a Page (11,379 bytes)
1: ...oved, it represents most of the points on quality page creation listed below).
5: ...ng to the [[Help:Editing|editing help]] reference pages.
7: ==Creating the page==
10: # check that a page on your topic doesn't exist already by using:
13: ...roteopedia:Page name]]. You can always rename the page later if necessary.
Page text matches
- Main Page 20190127 (6,331 bytes)
3: ...00am EDT (Eastern Daylight Time USA) till Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time US...
7: ...wse the current pages, but creation or editing of pages will be disabled, and it will not be possible to...
10: <!--Banner Across Top of Page-->
35: ...opedia Do For You" style="padding:2px 5px;">{{MainPageWCPDFU}}</div>
40: ...padding:2px 5px;" | <div id="News">{{Template:MainPageNews}}</div> - Telomerase Reverse Transcriptase (5,665 bytes)
11: [[Image:TERT_diagram.jpg|600px]]
83: ... by [[User:Tanja Emmerich]] and [[User:Vinzenz Alejandro Bayro Kaiser]].
84: [[Category:Topic Page]] - Help:Editing (24,612 bytes)
2: ...Video Guide|Video Guides]], and the main [[Help]] Page.
6: ...sheet] and [http://en.wikipedia.org/wiki/Help:Wiki_markup A Reference On Wikitext Syntax]</big>, both ...
10: ...rotected Sandbox is a good place to develop a new page: instructions are at [[Help:Sandboxes]].
12: ==How To Create A New Page==
13: ...ee [[Proteopedia:How to Make a Page|How to Make a Page]]. <br> - Acetylcholinesterase (8,905 bytes)
8: .../wiki/Enzyme enzyme] that had already been the subject of intensive investigation.<ref>PMID:1678899</...
9: ...and to [http://en.wikipedia.org/wiki/Site-directed_mutagenesis site-directed mutagenesis], utilizing s...
11: [[Image:Synapse_Schematic.jpg|thumb|Cholinergic Synapse|300px|left]]
24: ...ction (called "aging") to produce an OP-enzyme conjugate that cannot be reactivated.
25: ...versible inhibition of AChE, "aged" soman/AChE conjugate can not be reactivated. However, before “a... - NADPH oxidase 3D structures (1,568 bytes)
52: [[Category:Topic Page]] - Ferredoxin NADP+ Reductase 3D structures (3,803 bytes)
13: **[[1ogi]], [[1ogj]] - AnFNR fragment (mutant)<br />
15: ...h0]], [[1e62]], [[1e63]], [[1e64]], [[1b2r]], [[1bjk]] - NoFNR (mutant)<br />
18: **[[2bgj]] - RcFNR (mutant) - ''Rhodobacter capsulatus''<b...
29: **[[3jqr]] - PfFNR (mutant) – ''Plasmodium falciparum'...
36: **[[1gjr]], [[1w87]] - AnFNR fragment+NADP<br /> - Hemoglobin (21,535 bytes)
12: ... system, but the T to R transition provides the major, first-level explanation of its function.
18: ...tarting with an overview of the subunit. The 6 major and 2 short α-helices that make up the structu...
20: ... these changes, depending on conditions. <jmol><jmolButton>
23: </jmolButton></jmol>
39: ...aime_Prilusky/How_do_we_get_the_oxygen_we_breathe|page]]. Changes at the subunit interface (coupled wit... - Ann Taylor/Hemoglobin (7,678 bytes)
4: ...mine the subunit structure more closely. The 6 major and 2 short α-helices that make up the structu...
6: ... these changes, depending on conditions. <jmol><jmolButton>
9: </jmolButton></jmol>
26: ...data we will be using in a paper discussion, this page was created. - CHEM2052 Tutorial (6,397 bytes)
15: ...he structure. Alternatively, you can click on the Jmol symbol in the lower right-hand corner of each ...
18: ...ript><text>Click this button</text></jmolButton></jmol> to flip between structures.
35: ...erzmann/Sandbox_5/New_chymotrypsin-triad/13'>show just p-sulfinotoluene</scene> (<scene name='User:Am...
39: ...rder to easily compare the proteins shown on this page, some portions of the crystal structures have bee... - User:Wayne Decatur/Sandboxsurffade (1,352 bytes)
3: By request of Jaime Prilusky, this has been copied to [[Proteoped...
30: ===Code in Page Versions===
32: <jmol>
33: <jmolLink>
37: </jmolLink> - User:Jessica Sheehe (324 bytes)
1: * Full Real Name: Jessica Sheehe
9: ...ill be creating a proteopedia page for a class project under Dr. Stephen Everse.
11: *[[User:Jessica Sheehe/Sandbox 1]] - Help:Contents (6,488 bytes)
2: ...ological molecules. This is the directory of help pages for visitors and for registered users.
9: ...ries, starting with the suggestions on the [[Main Page]] or the table of contents or the structure index...
14: ...bout them. The [[About Macromolecular Structure]] page is a good place to start.
20: The section headed "Proteopedia Page Contributors and Editors" (on the bottom of the e...
24: ...es and create new ones. You will also have a user page to introduce yourself, and access to sandboxes wh... - Proteopedia:About (7,060 bytes)
15: * To complement published articles in journals via [[I3DC|Interactive 3D Complements - ''...
22: ...MBEROFARTICLES}} [[Special:Allpages | articles]] (pages), and {{NUMBEROFUSERS}} [[Special:Listusers | re...
27: ...ute">{{Special:ContributionScores}}Score based on pages-edited and number-of-edits.<br>List excludes mem...
30: ===Seeded pages===
31: ... released by the Protein Data Bank. Most of these pages, which are titled with a four-character [[PDB co... - Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
1: ...phate, Ca+2 (green) and Zn+2 (grey) (PDB code [[1xjo]])'>
3: [[Image:1xjo_cartoon.png |left| 200px | thumb | S griseus ami...
13: .../β fold, consisting of a 3-layer <scene name='1xjo/Sandwich/2'>αβα sandwich </scene>.
15: The <scene name='1xjo/Active_site/3'>active site</scene> of the enzyme...
17: ...ations. This structure revealed a <scene name='1xjo/Calcium_site/1'>calcium binding site</scene> nea... - Scene authoring tools (23,035 bytes)
1: ...d into [[Proteopedia]] pages. This is a reference page explaining the details once you are familiar with...
4: [[Image:SAT show.JPG|350px]]
6: ...holder content that includes these tags, but this page for example does not.
18: ...s that someone viewing the page can load into the Jmol viewer by clicking on green links. A scene st...
26: #Inserting the scene into the Proteopedia page. - Proteopedia (23 bytes)
1: #REDIRECT [[Main Page]] - Sandbox 781 (8,140 bytes)
9: ...ID:29438582</ref>.The structure presented in this page correspond to the MraY protein from the thermophi...
16: ...biological relevance in Bacteria, it has been a major target for antibiotics <ref name="three"/> <ref...
24: The basal 3D scene shown on this page corresponds to the <scene name='61/612822/Asymmet...
30: ... extensive hydrogen bond network in the uridine-adjacent pocket. from those results we can observe th...
40: *[[4j72]]:Crystal Structure of polyprenyl-phosphate N-a... - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
3: <scene name='User:Jaime_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: <scene name='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - User:Karsten Theis/Rigid body interpolation (4,709 bytes)
1: ...erform supoerpositions and to create morph, see [[Jmol/Storymorph]].
3: This page shows a way to superpose two rigid bodies so that...
93: for (var j FROM [1,sel.length]) {
94: s = sel[j]
95: a = anch[j] - 1dyw (4,962 bytes)
5: ...re components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DYW FirstGlance]. <br>
6: ...r id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="...
7: ...an class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dyw FirstGlance], [http://oca.weizman...
13: Check<jmol>
14: <jmolCheckbox>
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