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- Main Page 20190127 (6,331 bytes)
2: ...id #ddd;background-color:yellow;">Server maintenance warning:<br>
3: ...teopedia will be down for infrastructure maintenance from Monday, July 23, 2012 10:00am EDT (Eastern ...
7: ... will be disabled, and it will not be possible to create new userIDs during this period.
10: <!--Banner Across Top of Page-->
11: ...| id="Banner" style="width:100%; background:#F5F5FC; margin-top:1.2em; margin-left:0.4em; border:1px ... - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
2: ...ion='Insert caption here' scene='Insert optional scene name here' />
3: ...e_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: ...e='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - Main Page Static (1,585 bytes)
1: [[Image:1eve_Static.png|right|400px]]<br />
2: <big>Welcome to Proteopedia,</big>
4: ...rative, 3D encyclopedia of proteins and other molecules.
6: ... style="font-size: 14px; background-color: yellow;color:darkred;font-weight:bold;padding:10px;">
7: ...teopedia. Please download Java at http://www.java.com - Category:Page RC (38 bytes)
1: List of pages with the keyword Page RC - Proteopedia Page Contributors and Editors (1,834 bytes)
1: Proteopedia grows through an ongoing community effort.
3: ...ontains the real names of those who have been directly responsible for what you are
4: ...names of users whose contributions have been replaced or removed.
6: ...editors both receive appropriate credit for their contributions and take responsibility for their ent...
8: ==Content Donors ''vs'' Proteopedia Page Contributors and Editors== - Proteopedia:Page of the Year Competition (3,357 bytes)
1: __NOTOC__
2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
5: ... Competition'''! Could your page be '''''the best page'''''?
7: ... it is to edit pages in Proteopedia, and continue contributing in the future.
9: <font color='red'>The competition ends on December 31, 2009.</font> - Proteopedia:Page of the Year Entrants (2,819 bytes)
1: ...e Year Competition]] here. You can enter as many pages as you like.
2: ...nd then a link to the page you're entering in the competition.
8: ...s just an example, Eran cannot participate in the competition.
10: # [[User:Eran Hodis]] -- [[User:Eran_Hodis/Acetylcholinesterase]]
12: ...ilde Thomsen]] [[User:Mette Trauelsen]] -- [[Nitric Oxide Synthase]] - Proteopedia:Page of the Year Competition 2009 Winners (88 bytes)
1: ...a 2009 Page of the Year Competition will be announced here. - Proteopedia:Main page develop (7,341 bytes)
1: ...0%; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
4: ...175%; padding-top:0.5em; padding-left:30.0px;">Welcome to Proteopedia,</div>
5: ...aborative 3D encyclopedia of proteins & other molecules</div>
7: <table width="100%" colspan="2">
9: ...ng|Editing]] <font color="blue">•</font> [[Help:Contents|Help]]</td> - Main Page News (1,960 bytes)
1: __NOTOC__
3: ... is slower without Java, especially for large molecules (for example, the [[Ribosome]]).
4: ...r device has Java installed and working, you can achieve faster, smoother rotation by using Java: see
5: ...Rendering_Structures|using Java for rendering structures]].
8: ...e ''JmolExtension'' at [[Special:Version]] in the column ''(now loaded Jmol version .....)''. - Image:1B9C for group Page.jpg (33 bytes)
1: This is a jpg of our 1b9c mutant. - User:Jaime Prilusky/Workbench/Template Featured Page (188 bytes)
1: {{Featured article
3: |PAGENAME=HereTheActualPagename
5: |SCENE=12/3456/Sample/1
10: <!-- name as Proteopedia:Featured_article/0 --> - Image:Page 1 (1).jpg (0 bytes)
- Image:Page 2.jpg (0 bytes)
- User:Lauren Le Page (225 bytes)
1: * Full Real Name:Lauren Le Page
5: ...nstitution (NO ABBREVIATIONS): University of Massachusetts Amherst
7: * City, State/Province, Country: Amherst, MA
9: * Field of Expertise or Study: Animal Biotechnology - Proteopedia:Page of the Year 2009 (3,700 bytes)
1: __NOTOC__
2: [[Image:Ipodtouch_hero_20080205.png|right|200px]]
5: ... enjoyed reading your pages during the judging process!
7: ... Touch generously donated by [http://www.idigital.co.il iDigital], Apple's representatives in Israel.
9: ...oud to award highly-coveted Proteopedia Mugs to each of the runners-up as well as to the winner! - User:Eran Hodis/Sandbox Main Page (6,946 bytes)
1: ...0%; border:1px solid #E1A524; margin-top=1.0em; background: #FFFED1"
4: ...175%; padding-top:0.5em; padding-left:30.0px;">Welcome to Proteopedia,</div>
5: ...aborative 3D encyclopedia of proteins & other molecules</div>
7: <table width="100%" colspan="2">
9: ...ng|Editing]] <font color="blue">•</font> [[Help:Contents|Help]]</td> - Proteopedia:How to Make a Page (11,379 bytes)
1: ... it represents most of the points on quality page creation listed below).
5: ...ng to the [[Help:Editing|editing help]] reference pages.
7: ==Creating the page==
9: ... topic (generally: a protein, a molecule, or a concept)
10: # check that a page on your topic doesn't exist already by using: - User:Jaime Prilusky/Sandbox Main Page (5,009 bytes)
1: <!--Banner Across Top of Page-->
2: ...| id="Banner" style="width:100%; background:#F5F5FC; margin-top:1.2em; margin-left:0.4em; border:1px ...
3: | style="width:61%; color:#000;" |
5: <!--Welcome Banner-->
6: {| style="width:280px; border:none; background:none;" - Category:Page AN (38 bytes)
1: List of pages with the keyword Page AN
Page text matches
- Main Page 20190127 (6,331 bytes)
2: ...id #ddd;background-color:yellow;">Server maintenance warning:<br>
3: ...teopedia will be down for infrastructure maintenance from Monday, July 23, 2012 10:00am EDT (Eastern ...
7: ... will be disabled, and it will not be possible to create new userIDs during this period.
10: <!--Banner Across Top of Page-->
11: ...| id="Banner" style="width:100%; background:#F5F5FC; margin-top:1.2em; margin-left:0.4em; border:1px ... - Telomerase Reverse Transcriptase (5,665 bytes)
1: ...a - The TEN domain of the Telomerase Reverse Transcriptase of Tetrahymena Thermophila''' ==
4: == '''Introduction''' ==
6: ...fic telomeric DNA repeats to the 3'ends of linear chromosomes.
7: ...vide the template for telomeric DNA synthesis, which is done by the TERT.
8: ... TERTs have a large N-terminal extension which is called '''TERT essential N-terminal (TEN) domain'''... - Help:Editing (24,612 bytes)
1: <center><table style='background:#ffd8d8;' cellpadding='6'><tr><td>
2: ...Video Guide|Video Guides]], and the main [[Help]] Page.
3: </td></tr></table></center>
6: ...ia, as they have a much more complete help reference dealing with wikitext, and Proteopedia uses the ...
9: ==Use Sandboxes for practice editing== - Acetylcholinesterase (8,905 bytes)
1: ...2' caption='Torpedo california AChE (PDB code [[2ace]])'>
2: [[Image:small_wh_ray0001.gif|left|150px]]<br />
3: ... poisons is attributed primarily to their potent AChE inhibitors.
5: See also [[Acetylcholinesterase (Hebrew)]]
8: ...http://en.wikipedia.org/wiki/Protein proteins], such as - NADPH oxidase 3D structures (1,568 bytes)
1: ==3D structures of NADPH oxidase==
4: {{#tree:id=OrganizedByTopic|openlevels=0|
6: *Neutrophil cytosol factor 1 or p47phox
8: **[[1ng2]], [[1uec]] – hNCF1 SH3 domain 151-340 - human<br />
9: **[[1kq6]], [[1o7k]] – hNCF1 PX domain 1-123<br /> - Ferredoxin NADP+ Reductase 3D structures (4,378 bytes)
1: ...ription of the protein see [[Ferredoxin_NADP+ Reductase]]
2: {{#tree:id=OrganizedByTopic|openlevels=0|
6: **[[1frn]], [[1fnb]] - spFNR – spinach<br />
8: **[[2xnc]], [[1qg0]] – pFNR - pea<br />
11: ...[[3lxd]] – FNR ARR – ''Novosphingobium aromaticivorans''<br /> - Hemoglobin (19,234 bytes)
1: ...ystallographic structure of HbII- oxy [[3P31]]" scene="Hemoglobinits/5" >
2: == Function ==
3: ...gen-transport protein. Hemoglobin is an allosteric protein. It is a <jmol>
5: <script> script /scripts/32/32/Subunits_1hho/1.spt;
6: center visible;</script> - Ann Taylor/Hemoglobin (7,712 bytes)
1: ...chain (green and yellow) with bound O2 [[1gzx]]" scene="Hemoglobin/1gzx/2" >
2: ...3'>heme molecules</scene> give hemoglobin its red color.
4: ...e='57/576710/Oxy_fe_planarity/3'>into the plane</scene> of the heme.
6: ...s some but not all of these changes, depending on conditions. <jmol><jmolButton>
7: ... Paused; else; anim resume; set echo off;endif;</script> - CHEM2052 Tutorial (6,397 bytes)
1: ...n-triad/2' caption='α-chymoptrypsin (PDB code [[2cha]])'>
2: == '''Chem2052: Example 3 - Serine Proteases''' ==
4: ... and molecular biology to ascertain protein sequences.
6: ...classic example of how '''''structure dictates function'''''!
8: ...andbox_5/New_chymotrypsin-triad/2'>Chymotrypsin</scene> - User:Wayne Decatur/Sandboxsurffade (1,352 bytes)
1: __NOTOC__
3: By request of Jaime Prilusky, this has been copied to [[Proteopedia:DIY:Templates]]
5: ==Testing Surface fade==
6: ...ize='350' frame='true' align='right' caption='.' scene='60/607777/Surf_test/1' pspeed='8' />
11: {{Link FadeSurfaceBasic}} (basic) - User:Jessica Sheehe (324 bytes)
1: * Full Real Name: Jessica Sheehe
7: * City, State/Province, Country: Burlington, VT USA
9: ...l be creating a proteopedia page for a class project under Dr. Stephen Everse.
11: *[[User:Jessica Sheehe/Sandbox 1]] - Help:Contents (6,518 bytes)
1: __NOTOC__
2: ...ological molecules. This is the directory of help pages for visitors and for registered users.
8: ===<i class="fas fa-directions"></i> Navigating Proteopedia===
9: ...). This is a way to browse entries on related topics.
13: ===<i class="fas fa-glasses"></i> Reading and viewing ent... - Proteopedia:About (7,060 bytes)
1: <div class="toclimit-2">
2: __TOC__
5: ...apabilities, Types of Contents, and Usage Statistics. More details follow below.
8: ...rative 3D-encyclopedia of proteins & other biomolecules.'''
11: ...ins, macromolecules, and small molecules and chemicals of interest. - Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
1: ...ine, phosphate, Ca+2 (green) and Zn+2 (grey) (PDB code [[1xjo]])'>
3: ...howing overall fold. Zinc ions are dark grey, calcium ion is white.]]
4: == ''Streptomyces griseus'' Aminopeptidase (SGAP) ==
6: ==Biological function==
7: ...rophobic acids, especially leucine. No cleavage occurs if the next residue is proline. - Scene authoring tools (23,035 bytes)
1: ...a's Scene Authoring Tools]], and watch the introductory videos, e.g. [https://youtu.be/P-LsB2U8rNM].
3: ==Where are the ''Scene authoring tools''?==
6: ...holder content that includes these tags, but this page for example does not.
9: <!--<Structure load='
11: ...ion='Insert caption here' scene='Insert optional scene name here' /> - Sandbox 781 (8,140 bytes)
1: =Crystal structure of MraY bound to carbacaprazamycin, 6OYH =
3: ...H))' size='340' side='right' caption='Crystal structure of two MraY dimers'>
6: = Introduction =
9: ...aprazamycin.MraYAA was expressed in ''Escherichia coli''.
11: == Carbacaprazamycin == - User:Jaime Prilusky/page'quote (322 bytes)
1: A page with a single quote character in the name
2: ...ion='Insert caption here' scene='Insert optional scene name here' />
3: ...e_Prilusky/page'quote/Test/1'>TextToBeDisplayed</scene>
4: ...e='User:Jaime_Prilusky/page'quote/Test27/1'>T27</scene> - User:Karsten Theis/Rigid body interpolation (4,709 bytes)
1: ...rph Jmol scrips to perform supoerpositions and to create morph, see [[Jmol/Storymorph]].
3: ...hor (center of mass, given atom) is in the same location.
5: ... same atoms in the same order, but with different coordinates.
9: * Linear interpolation of coordinates in the atom sets sel1 and sel2
10: ...l1 First set of atoms, will be modified by the function - 1dyw (4,962 bytes)
2: ...acterization of a divergent loop cyclophilin from Caenorhabditis elegans==
3: ...[[1dyw]], [[Resolution|resolution]] 1.80Å' scene=''>
4: == Structural highlights ==
5: ...s://proteopedia.org/fgij/fg.htm?mol=1DYW FirstGlance]. <br>
6: ...><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></t... - User:Anna Leibinger/Sandbox 1 (11,577 bytes)
1: ...Click above on '''edit this page''' to modify. Be careful with the < and > signs.
2: ... Leibinger|Anna Leibinger]] 14:55, 1 June 2024 (UTC)
14: '''Introduction'''
16: ...biological pathways, notably those involved in cancer and neurodegenerative diseases.
20: =''' Structure of the SH3 site of Protein Bin1=
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