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- Peptide (2,365 bytes)
1: ...8" size="500" color="white" frame="true" caption="Peptides, small chains of amino acids." align="right" />
3: ...scussion of [http://en.wikipedia.org/wiki/Peptide peptides, with examples].
5: ==Peptides & Backbones==
6: ...one trace</scene>. Showing only the <scene name='Peptide/Emartz_view9/6'>backbone</scene> makes it easier ...
9: *[[Thermal motion of peptide]] - Category:Viral protein/peptide (52 bytes)
1: List of pages with the keyword Viral protein/peptide - Category:Complex transferase-peptide (58 bytes)
1: ...ist of pages with the keyword Complex transferase-peptide - Category:Toxin/peptide (44 bytes)
1: List of pages with the keyword Toxin/peptide - Image:Isocitrate dehydrogenase regulatory peptide conformation.png (326 bytes)
2: 1T09 PDB code, aligment of subunits A and B jFATCAT flexib...
3: ...hows the change of the position of the regulatory peptide (residues 271-286)in IDH with bound NADP
7: - Regulatory peptides in darker shades - Category:Signaling protein-peptide complex (64 bytes)
1: List of pages with the keyword Signaling protein-peptide complex - Image:SCT-rAmy Peptide Overlay.png (0 bytes)
- Image:Protein+peptide.pdb (0 bytes)
- Category:Vancomycin peptide-antibiotic complex (68 bytes)
1: List of pages with the keyword Vancomycin peptide-antibiotic complex - Category:Phosphatase-derived peptide (58 bytes)
1: ...ist of pages with the keyword Phosphatase-derived peptide - Category:Rev peptide-rna recognition (58 bytes)
1: List of pages with the keyword Rev peptide-rna recognition - Category:Salmon protamine peptide (55 bytes)
1: List of pages with the keyword Salmon protamine peptide - Category:Photocleavable peptide (53 bytes)
1: List of pages with the keyword Photocleavable peptide - Category:Antimicrobial peptide (57 bytes)
1: List of structures with the keyword Antimicrobial peptide - Category:Micelle-bound peptide (57 bytes)
1: List of structures with the keyword Micelle-bound peptide - Category:Peptide hormone (46 bytes)
1: List of pages with the keyword Peptide hormone - Category:Protein-peptide complex (54 bytes)
1: List of pages with the keyword Protein-peptide complex - Category:Transit peptide (46 bytes)
1: List of pages with the keyword Transit peptide - Category:Phosphorylated peptide recognition (65 bytes)
1: List of pages with the keyword Phosphorylated peptide recognition - Category:Amyloid beta peptide (51 bytes)
1: List of pages with the keyword Amyloid beta peptide
Page text matches
- NADPH oxidase 3D structures (1,568 bytes)
28: **[[1k4u]] – hNCF1 peptide + hNCF2 C-terminal SH3 domain 455-516 (mutant) - ...
32: **[[1w70]] – hNCF1 peptide + hNCF4 SH3 domain <br /> - Ferredoxin NADP+ Reductase 3D structures (4,378 bytes)
60: **[[3mhp]] – pFNR + peptide<br /> - Glycine (1,584 bytes)
9: ...rt of the <scene name='Glycine/Emartz_backbone/1'>peptide backbone (main chain)</scene> are highlighted. Se... - Peptide (2,365 bytes)
1: ...8" size="500" color="white" frame="true" caption="Peptides, small chains of amino acids." align="right" />
3: ...scussion of [http://en.wikipedia.org/wiki/Peptide peptides, with examples].
5: ==Peptides & Backbones==
6: ...one trace</scene>. Showing only the <scene name='Peptide/Emartz_view9/6'>backbone</scene> makes it easier ...
9: *[[Thermal motion of peptide]] - CHEM2052 Tutorial (6,397 bytes)
1: ..._chymotrypsin-triad/2' caption='α-chymoptrypsin (PDB code [[2cha]])'>
6: ...different specificities. Each protein cleaves the peptide backbone after (or on the carbonyl side) of a spe...
18: ...ck;font-weight:bold;">elastase is in pink</span>, PDB code [[4est]]). <jmol><jmolButton><script>frame n...
25: ... <font color="FF0000">Asp189</font>. Consider the peptide-based inhibitor called <scene name='User:Amy_Kerz...
35: ...e location as the carbonyl group of the substrate peptide. - Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
1: ...hionine, phosphate, Ca+2 (green) and Zn+2 (grey) (PDB code [[1xjo]])'>
7: ....4.11.-) cleaves the N-terminal amino acid from a peptide or protein, and is specific for larger hydrophobi...
32: ...e cleaved an N-blocked peptide to release smaller peptide that was rapidly degraded by an aminopeptidase, g...
56: ...loendopeptidase from porcine kidney that degrades peptide hormones. ''Proc. Natl Acad. Sci. USA'' '''78'''... - 2src (9,009 bytes)
5: ...doi.org/10.2210/rcsb_pdb/mom_2004_12 10.2210/rcsb_pdb/mom_2004_12]. Full crystallographic information i...
7: ...C+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2src ProSAT]</span></td></tr>
22: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2src ConSurf].
26: ...ive conformation of the kinase domain, blocks the peptide substrate-binding site, and prevents Tyr-416 phos... - 1mty (5,005 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mty ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mty ConSurf].
24: ...rroborated by inhibition studies with a synthetic peptide corresponding to the proposed docking position.
30: <div class="pdbe-citations 1mty" style="background-color:#fffaf0;... - 1vyk (4,647 bytes)
7: ...ligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vyk ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vyk ConSurf].
24: ...h is stabilized by hydrogen bonds between the Pro peptide carbonyl groups and solvent water molecules. Thir...
30: <div class="pdbe-citations 1vyk" style="background-color:#fffaf0;... - 1jlm (5,879 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jlm ProSAT]</span></td></tr>
13: ...ogen, factor X and ICAM1. It recognizes P1 and P2 peptides of fibrinogen gamma chain.
22: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jlm ConSurf].
32: <div class="pdbe-citations 1jlm" style="background-color:#fffaf0;... - 1cvl (4,567 bytes)
7: ...<td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cvl ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cvl ConSurf].
24: ...mide nitrogen atoms of Leu17 and Gln88, and a cis-peptide bond between Gln291 and Leu292. CVL contains a Ca...
30: <div class="pdbe-citations 1cvl" style="background-color:#fffaf0;... - 2cno (5,404 bytes)
2: ...ystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.==
7: ...BENZYL+CHLOROCARBONATE'>PHQ</scene>, <scene name='pdbligand=PRD_000670:CBZ-GLU-VAL-azaASP-(S,S)EP-CO-NH...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cno ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cno ConSurf].
24: ...e the binding affinity and specificity of the aza-peptide epoxide inhibitors toward caspase-3. The studies ... - 2cni (5,849 bytes)
7: ...OXY}-6-HYDROXYBENZOATE'>IZF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cni ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cni ConSurf].
24: ...ain the favorable hydrogen bonding network of the peptide scaffold, their aryl rings interact weakly with t...
30: <div class="pdbe-citations 2cni" style="background-color:#fffaf0;... - 2cns (4,395 bytes)
7: ...ACO:ACETYL+COENZYME+*A'>ACO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cns ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cns ConSurf].
24: ...ters for RimI(ST) were determined for AcCoA and a peptide substrate consisting of the first six amino acids...
30: <div class="pdbe-citations 2cns" style="background-color:#fffaf0;... - 2cnh (5,858 bytes)
7: ...dbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IZB:N-[(1S)-1-(1H-BENZIMIDAZOL-2-YL)-2-{4-[...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnh ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cnh ConSurf].
24: ...ain the favorable hydrogen bonding network of the peptide scaffold, their aryl rings interact weakly with t...
30: <div class="pdbe-citations 2cnh" style="background-color:#fffaf0;... - 2cnk (5,200 bytes)
2: ...ystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.==
7: ...]HYDRAZINO}ACETIC+ACID'>MY2</scene>, <scene name='pdbligand=PHQ:BENZYL+CHLOROCARBONATE'>PHQ</scene></td...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnk ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cnk ConSurf].
24: ...e the binding affinity and specificity of the aza-peptide epoxide inhibitors toward caspase-3. The studies ... - 2cnn (5,249 bytes)
2: ...ystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.==
7: ...OXY-4-OXOBUTANOIC+ACID'>MY0</scene>, <scene name='pdbligand=PHQ:BENZYL+CHLOROCARBONATE'>PHQ</scene></td...
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnn ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cnn ConSurf].
24: ...e the binding affinity and specificity of the aza-peptide epoxide inhibitors toward caspase-3. The studies ... - 2cnt (4,435 bytes)
7: ...pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnt ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cnt ConSurf].
24: ...ters for RimI(ST) were determined for AcCoA and a peptide substrate consisting of the first six amino acids...
30: <div class="pdbe-citations 2cnt" style="background-color:#fffaf0;... - 2cnm (4,455 bytes)
7: ...igand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnm ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cnm ConSurf].
24: ...ters for RimI(ST) were determined for AcCoA and a peptide substrate consisting of the first six amino acids...
30: <div class="pdbe-citations 2cnm" style="background-color:#fffaf0;... - 2cng (5,901 bytes)
7: ...2,2-TRIFLUOROACETAMIDE'>IZE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
8: ...Bsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cng ProSAT]</span></td></tr>
20: ...://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cng ConSurf].
24: ...ain the favorable hydrogen bonding network of the peptide scaffold, their aryl rings interact weakly with t...
30: <div class="pdbe-citations 2cng" style="background-color:#fffaf0;...
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