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Image:Proteins-cn.jpg (0 bytes)
Image:Proteins-cs.jpg (0 bytes)
Image:Proteins-quaternary.jpg (0 bytes)
Hiv env proteins (9,697 bytes)
1: ...ght' caption='Molecular structure for the HIV-1 gp120 trimer in the unliganded state (PDB entry [[3dn...
3: ... in its unbound trimer state <ref name=Nick>PMID: 18668044 </ref>.
6: ..., as mentioned above, is composed of gp120 and gp41 that forms trimers on the viral membrane surface....
7: ...on_HIV1.png|left|thumb|400px|<ref name=Nick>PMID: 18668044 </ref>]]
9: ...onsequently inducing fusion <ref name=Guan>PMID: 21076402 </ref>.
Knots in proteins (169 bytes)
6: ...e under development at [[User:Eric_Martz/Sandbox_11]].
Knots in Proteins: Methods (100 bytes)
1: ...User:Eric_Martz/Sandbox_11]]. See also [[Knots in proteins]].
Category:Alpha and beta class of proteins with mainly parallell strand (92 bytes)
1: ...of pages with the keyword Alpha and beta class of proteins with mainly parallell strand
Category:Designer Proteins (48 bytes)
1: List of pages with the keyword Designer Proteins
Category:Chemotaxis binding proteins for active transport (79 bytes)
1: List of pages with the keyword Chemotaxis binding proteins for active transport
User:James D Watson/Proteins Intro (3,070 bytes)
1: ==Introduction to proteins==
2: ...eaching. I will copy some of the info from the 5p21 page and use it here to expand details and bring ...
4: ==5p21 Overview==
6: {{STRUCTURE_5p21 | PDB=5p21 | SCENE= }}
8: ... hydrogen bonds from residues Thr35, Gly60 and Lys16. A mechanism for rate enhancement by GAP is also...
Category:G Proteins (41 bytes)
1: List of pages with the keyword G Proteins
Category:Ribosomal proteins s15 (53 bytes)
1: ...ist of pages with the keyword Ribosomal proteins s15
Category:Penicillin-binding Proteins (58 bytes)
1: List of pages with the keyword Penicillin-binding Proteins
Category:Interaction coiled-doil proteins with globular protein (85 bytes)
1: ...of pages with the keyword Interaction coiled-doil proteins with globular protein
Image:Proteins.gif (0 bytes)
Category:Electron transport proteins complex (66 bytes)
1: List of pages with the keyword Electron transport proteins complex
Category:Degradation of proteins and peptide (66 bytes)
1: List of pages with the keyword Degradation of proteins and peptide
Category:Yjgf proteins family (51 bytes)
1: List of pages with the keyword Yjgf proteins family
Colored & Bioluminescent Proteins (1,279 bytes)
3: [[Colored & Bioluminescent Proteins]] are known for their ability to fluoresce, like ...
7: ...Proteopedia concerning [[Colored & Bioluminescent Proteins]] include:
13: ** [[User:Lois_A._Fridmann/Sandbox_1|GFP Mutant]]
18: ** [[2d1r|Luciferase Structural Analysis]]
24: ...ded indices concerning [[Colored & Bioluminescent Proteins]] See:
Category:Circadian Clock Proteins (55 bytes)
1: List of pages with the keyword Circadian Clock Proteins

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Main Page 20190127 (6,331 bytes)
2: <div style="font-size:1.5em;border:1px solid #ddd;background-color:yellow;">Server mai...
3: ...rn Daylight Time USA) till Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
7: ...edia will be in a READ-ONLY mode for Mar 18-21, 2017, in order to move Proteopedia to a better serve...
11: ...F5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;"
12: | style="width:61%; color:#000;" |
Sandbox Dav 14 (1,103 bytes)
1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
5: <applet load='1ema' size='300' frame='true' align='right' caption...
8: ... amino acids. The <scene name='Sandbox_Dav_14/Gfp/1'>TextToBeDisplayed</scene>, responsible for the f...
Sandbox dav 4 (1,378 bytes)
1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
5: <applet load='1ema' size='300' frame='true' align='center' captio...
6: ...8 amino acids. The <scene name='Sandbox_dav_4/Gfp/1'>chormophore</scene>
7: ...gh the barrel. The <scene name='Sandbox_dav_4/Gfp/1'>chromophore</scene>
Acetylcholinesterase (8,905 bytes)
2: [[Image:small_wh_ray0001.gif|left|150px]] 
8: ...reatment of [http://en.wikipedia.org/wiki/Protein proteins], such as
13: ...> group. ACh directly binds <scene name='22/22/Cv/1'>Ser200</scene> (via its [http://en.wikipedia.org...
18: ... degeneration of its neurons. AD occurs in around 10% of the elderly and, as yet, there is no known c...
20: ...plexed with N-9-(1',2',3',4'-tetrahydroacridinyl)-1,8-diaminooctane]].
Glycine (1,584 bytes)
1: ... align="right" scene='Glycine/Emartz_ballandstick/1' />
3: ...nal freedom and is frequently found in [[Turns in Proteins|turns]] along with [[proline]].
6: *The <scene name='Glycine/Emartz_ballandstick/1'>ball and stick</scene> (also called "ball and sp...
7: *The <scene name='Glycine/Emartz_spacefill/1'>spacefilling</scene> representation shows size (...
8: ...rough layers of a large molecule. Even better for proteins are [[Backbone representations|schematic backbone...
Peptide (2,365 bytes)
1: <applet load="" scene="Peptide/Emartz_view1/8" size="500" color="white" frame="true" caption=...
3: ... chains of amino acids are called polypeptides or proteins. Wikipedia offers a good discussion of [http://en...
6: ...ick representation has too much detail for larger proteins, so the α-carbons are connected with a line call...
18: ...utorial] implemented with [[Chime]] in September, 1997, and a [http://molviz.org/hemoglobin Hemoglobi...
Hemoglobin (19,366 bytes)
1: ...pink) β chain (green and yellow) with bound O2 [[1gzx]]" scene="Hemoglobin/Foursubunits/5" >
5: <script> script /scripts/32/32/Subunits_1hho/1.spt;
15: ...lobin monomer from <scene name='32/32/Hemoglobins_1hho/9'>glutamic acid to a valine</scene>. This he...
16: ...hemoglobin''' found in neural tissue and contains 109 residues<ref>PMID:9642264</ref> .
17: ...is with sulfur-oxidizing bacteria<ref>PMID:16204001</ref> .
CHEM2052 Tutorial (6,397 bytes)
4: ...ref>PMID:17991683</ref>,<ref name="DiCera">PMID:19180666</ref>. Within the diverse collection of seri...
6: ...mall differences in amino acid sequence among the proteins, which are reflected in their different specific...
16: ...alled a '''charge relay system''' <ref>PMID: 7016210</ref>.
18: ...old;">trypsin is in light blue, PDB code [[1aq7]] and <span style="color:pink;background-color...
25: ... residue of this inhibitor is interacting with Asp189?
NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol (8,927 bytes)
1: ...dehydrogenase complex with FAD and dicoumarol [[2f1o]]'>
2: ...stal structure of NADH quinone oxidoreductase (NQO1) in complex with its potent inhibitor dicoumarol ...
5: ...p://www.expasy.org/cgi-bin/nicezyme.pl?1.6.5.2 EC 1.6.5.2]) is a ubiquitous [http://medical-dictionar...
6: .... The NAD(P)H and the quinone binding sites of NQO1 have a significant overlap, thus providing a mole...
7: ...icoumarol competes with NAD(P)H for binding to NQO1 and prevents the [http://en.wikipedia.org/wiki/El...
Help:Contents (6,518 bytes)
2: ...ia:Overview|Overview]]) is the 3D encyclopedia of proteins and other biological molecules. This is the direc...
Proteopedia:About (7,060 bytes)
8: ...ce as a '''free, collaborative 3D-encyclopedia of proteins & other biomolecules.'''
11: ...hare, retrieve and discuss information related to proteins, macromolecules, and small molecules and chemical...
25: <table border='1'>
26: ...7D7FE; font-size:1.25em; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#000; pad...
31: ...], which contained >148,000 entries in January, 2019. Proteopedia is updated weekly with new entries ...
2src (9,009 bytes)
3: ...ight'caption='[[2src]], [[Resolution|resolution]] 1.50Å' scene=''>
5: ...10/rcsb_pdb/mom_2004_12 10.2210/rcsb_pdb/mom_2004_12]. Full crystallographic information is available...
6: ...ay diffraction, [[Resolution|Resolution]] 1.5Å</td></tr>
13: ...09750</ref> <ref>PMID:21411625</ref> <ref>PMID:22710723</ref>
26: ...ould lead to exposure and phosphorylation of Tyr-416.
102l (2,926 bytes)
3: ...ight'caption='[[102l]], [[Resolution|resolution]] 1.74Å' scene=''>
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=102L FirstGlance]. 
6: ...y diffraction, [[Resolution|Resolution]] 1.74Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=102l ProSAT]</td></tr>
11: ...break down the peptidoglycan layer.<ref>PMID:22389108</ref>
103l (2,925 bytes)
3: ...ight'caption='[[103l]], [[Resolution|resolution]] 1.90Å' scene=''>
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=103L FirstGlance]. 
6: ...ay diffraction, [[Resolution|Resolution]] 1.9Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=103l ProSAT]</td></tr>
11: ...break down the peptidoglycan layer.<ref>PMID:22389108</ref>
107l (2,925 bytes)
3: ...ight'caption='[[107l]], [[Resolution|resolution]] 1.80Å' scene=''>
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=107L FirstGlance]. 
6: ...ay diffraction, [[Resolution|Resolution]] 1.8Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=107l ProSAT]</td></tr>
11: ...break down the peptidoglycan layer.<ref>PMID:22389108</ref>
108l (2,925 bytes)
3: ...ight'caption='[[108l]], [[Resolution|resolution]] 1.80Å' scene=''>
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=108L FirstGlance]. 
6: ...ay diffraction, [[Resolution|Resolution]] 1.8Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=108l ProSAT]</td></tr>
11: ...break down the peptidoglycan layer.<ref>PMID:22389108</ref>
109l (2,926 bytes)
3: ...ight'caption='[[109l]], [[Resolution|resolution]] 1.85Å' scene=''>
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=109L FirstGlance]. 
6: ...y diffraction, [[Resolution|Resolution]] 1.85Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=109l ProSAT]</td></tr>
11: ...break down the peptidoglycan layer.<ref>PMID:22389108</ref>
1mty (5,005 bytes)
3: ...ight'caption='[[1mty]], [[Resolution|resolution]] 1.70Å' scene=''>
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=1MTY FirstGlance]. 
6: ...ay diffraction, [[Resolution|Resolution]] 1.7Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mty ProSAT]</td></tr>
16: ...rf_initial_scene = true; script "/wiki/ConSurf/mt/1mty_consurf.spt"</scriptWhenChecked>
1e4v (4,128 bytes)
2: ==Mutant G10V of adenylate kinase from E. coli, modified in t...
3: ...ight'caption='[[1e4v]], [[Resolution|resolution]] 1.85Å' scene=''>
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=1E4V FirstGlance]. 
6: ...y diffraction, [[Resolution|Resolution]] 1.85Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e4v ProSAT]</td></tr>
1e4i (5,527 bytes)
3: ...ion load='1e4i' size='340' side='right'caption='[[1e4i]], [[Resolution|resolution]] 2.00Å' scen...
5: ... use [https://proteopedia.org/fgij/fg.htm?mol=1E4I FirstGlance]. 
6: ...-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e4i ProSAT]</td></tr>
16: ...rf_initial_scene = true; script "/wiki/ConSurf/e4/1e4i_consurf.spt"</scriptWhenChecked>

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