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- Image:Proteins-cn.jpg (0 bytes)
- Image:Proteins-cs.jpg (0 bytes)
- Image:Proteins-quaternary.jpg (0 bytes)
- Hiv env proteins (9,697 bytes)
1: ...ht' caption='Molecular structure for the HIV-1 gp120 trimer in the unliganded state (PDB entry [[3dnn...
3: ...he protein structure shown on the right is the gp120 portion of Env in its unbound trimer state <ref ...
6: ...nv protein, as mentioned above, is composed of gp120 and gp41 that forms trimers on the viral membran...
9: ...ently inducing fusion <ref name=Guan>PMID: 21076402 </ref>.
11: == gp120 Binding == - Knots in proteins (169 bytes)
- Knots in Proteins: Methods (100 bytes)
1: ...User:Eric_Martz/Sandbox_11]]. See also [[Knots in proteins]]. - Category:Alpha and beta class of proteins with mainly parallell strand (92 bytes)
1: ...of pages with the keyword Alpha and beta class of proteins with mainly parallell strand - Category:Designer Proteins (48 bytes)
1: List of pages with the keyword Designer Proteins - Category:Chemotaxis binding proteins for active transport (79 bytes)
1: List of pages with the keyword Chemotaxis binding proteins for active transport - User:James D Watson/Proteins Intro (3,070 bytes)
1: ==Introduction to proteins==
2: ...teaching. I will copy some of the info from the 5p21 page and use it here to expand details and bring...
4: ==5p21 Overview==
6: {{STRUCTURE_5p21 | PDB=5p21 | SCENE= }}
8: ...e atoms are four times the average value of 16.1 A2 due to the multiple conformations. In one of thes... - Category:G Proteins (41 bytes)
1: List of pages with the keyword G Proteins - Category:Ribosomal proteins s15 (53 bytes)
1: List of pages with the keyword Ribosomal proteins s15 - Category:Penicillin-binding Proteins (58 bytes)
1: List of pages with the keyword Penicillin-binding Proteins - Category:Interaction coiled-doil proteins with globular protein (85 bytes)
1: ...of pages with the keyword Interaction coiled-doil proteins with globular protein - Image:Proteins.gif (0 bytes)
- Category:Electron transport proteins complex (66 bytes)
1: List of pages with the keyword Electron transport proteins complex - Category:Degradation of proteins and peptide (66 bytes)
1: List of pages with the keyword Degradation of proteins and peptide - Category:Yjgf proteins family (51 bytes)
1: List of pages with the keyword Yjgf proteins family - Colored & Bioluminescent Proteins (1,279 bytes)
3: [[Colored & Bioluminescent Proteins]] are known for their ability to fluoresce, like ...
7: ...Proteopedia concerning [[Colored & Bioluminescent Proteins]] include:
14: ** [[User:Lois A. Fridmann/Sandbox 2|GFP Mutant #2]]
16: ** [[Sandbox2442| Japanese Firefly Luciferase complexed with Oxylu...
18: ** [[2d1r|Luciferase Structural Analysis]] - Category:Circadian Clock Proteins (55 bytes)
1: List of pages with the keyword Circadian Clock Proteins
Page text matches
- Main Page 20190127 (6,331 bytes)
3: ...stern Daylight Time USA) till Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
7: ...opedia will be in a READ-ONLY mode for Mar 18-21, 2017, in order to move Proteopedia to a better ser...
11: ...yle="width:100%; background:#F5F5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;"
13: <span style="font-size:2.0em; border:none; margin:0; padding:0.3em; color:...
14: ...:5px;">The free, collaborative 3D-encyclopedia of proteins & other molecules</span> - Sandbox Dav 14 (1,103 bytes)
1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
8: ...1 beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The <scene name='Sandbox_Dav_14/Gf... - Sandbox dav 4 (1,378 bytes)
1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
6: ...1 beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The <scene name='Sandbox_dav_4/Gfp... - Acetylcholinesterase (8,905 bytes)
1: ...h/2' caption='Torpedo california AChE (PDB code [[2ace]])'>
8: ...reatment of [http://en.wikipedia.org/wiki/Protein proteins], such as
13: ...er this binding acetylcholinesterase <scene name='2ace/Cv/7'>hydrolysizes</scene> ACh. <br />
20: *[[Acetylcholinesterase complexed with N-9-(1',2',3',4'-tetrahydroacridinyl)-1,8-diaminooctane]].<...
25: ...cleavage</scene> of the phosphonyl adduct from Ser200 Oγ. - Glycine (1,584 bytes)
3: ...nal freedom and is frequently found in [[Turns in Proteins|turns]] along with [[proline]].
8: ...rough layers of a large molecule. Even better for proteins are [[Backbone representations|schematic backbone... - Peptide (2,365 bytes)
3: ... chains of amino acids are called polypeptides or proteins. Wikipedia offers a good discussion of [http://en...
6: ...ick representation has too much detail for larger proteins, so the α-carbons are connected with a line call...
18: ...lobin Tutorial] implemented with [[Jmol]] in July 2007. - Hemoglobin (19,234 bytes)
5: <script> script /scripts/32/32/Subunits_1hho/1.spt;
9: ...scene>. The <scene name='Hemoglobin/1subunits/5'>2 subunits</scene> , facing each other across a <sc...
11: ...ins one <scene name='Hemoglobin/Deoxyheme_fe/9'>Fe2+</scene> atom. In the lungs, where oxygen is abun...
15: ...is hemoglobin variant is termed 'hemoglobin S' ([[2hbs]]).
16: ...ral tissue and contains 109 residues<ref>PMID:9642264</ref> . - CHEM2052 Tutorial (6,397 bytes)
1: ...in-triad/2' caption='α-chymoptrypsin (PDB code [[2cha]])'>
2: == '''Chem2052: Example 3 - Serine Proteases''' ==
6: ...mall differences in amino acid sequence among the proteins, which are reflected in their different specific...
8: ...ser:Amy_Kerzmann/Sandbox_5/New_chymotrypsin-triad/2'>Chymotrypsin</scene>
16: ...called a '''charge relay system''' <ref>PMID: 7016210</ref>. - NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol (8,927 bytes)
1: ...H dehydrogenase complex with FAD and dicoumarol [[2f1o]]'>
5: ...w.expasy.org/cgi-bin/nicezyme.pl?1.6.5.2 EC 1.6.5.2]) is a ubiquitous [http://medical-dictionary.thef...
8: ...tin-independent_degradation ubiquitin-independent 20S proteasomal degradation]. Dicoumarol and severa...
10: ...nt>). Therefore, each from these two <scene name='2f1o/Active_site/3'>dicoumarol-hNQO1 binding sites<...
14: ...e <font color='blue'><b>apo hNQO1</b></font> to ~12 Å in the <font color='magenta'><b>dicoumarol/hNQ... - Help:Contents (6,518 bytes)
2: ...ia:Overview|Overview]]) is the 3D encyclopedia of proteins and other biological molecules. This is the direc... - Proteopedia:About (7,060 bytes)
1: <div class="toclimit-2">
8: ...ce as a '''free, collaborative 3D-encyclopedia of proteins & other biomolecules.'''
11: ...hare, retrieve and discuss information related to proteins, macromolecules, and small molecules and chemical...
26: ...d #a3b0bf; text-align:left; color:#000; padding:0.2em 0.4em;">The Scoreboard</td></tr>
31: ...nk], which contained >148,000 entries in January, 2019. Proteopedia is updated weekly with new entrie... - 2src (9,009 bytes)
3: ...ion load='2src' size='340' side='right'caption='[[2src]], [[Resolution|resolution]] 1.50Å' scen...
5: ...</b> use [https://proteopedia.org/fgij/fg.htm?mol=2SRC FirstGlance]. <br>
8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=2src ProSAT]</span></td></tr>
13: ...50</ref> <ref>PMID:21411625</ref> <ref>PMID:22710723</ref>
15: [[Image:Consurf_key_small.gif|200px|right]] - 102l (2,926 bytes)
3: ...n load='102l' size='340' side='right'caption='[[102l]], [[Resolution|resolution]] 1.74Å' scene=...
5: ...b> use [https://proteopedia.org/fgij/fg.htm?mol=102L FirstGlance]. <br>
8: ...tps://prosat.h-its.org/prosat/prosatexe?pdbcode=102l ProSAT]</span></td></tr>
11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
13: [[Image:Consurf_key_small.gif|200px|right]] - 103l (2,925 bytes)
5: <table><tr><td colspan='2'>[[103l]] is a 1 chain structure with sequence fr...
11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
13: [[Image:Consurf_key_small.gif|200px|right]]
20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the... - 107l (2,925 bytes)
5: <table><tr><td colspan='2'>[[107l]] is a 1 chain structure with sequence fr...
11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
13: [[Image:Consurf_key_small.gif|200px|right]]
20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the... - 108l (2,925 bytes)
5: <table><tr><td colspan='2'>[[108l]] is a 1 chain structure with sequence fr...
11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
13: [[Image:Consurf_key_small.gif|200px|right]]
20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the... - 109l (2,926 bytes)
5: <table><tr><td colspan='2'>[[109l]] is a 1 chain structure with sequence fr...
11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
13: [[Image:Consurf_key_small.gif|200px|right]]
20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the... - 1mty (5,005 bytes)
5: <table><tr><td colspan='2'>[[1mty]] is a 6 chain structure with sequence fr...
13: [[Image:Consurf_key_small.gif|200px|right]]
20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
24: ...he two iron atoms are octahedrally coordinated by 2 histidine and 4 glutamic acid residues as well as...
26: ...s. 1997 Oct;29(2):141-52. PMID:9329079<ref>PMID:9329079</ref> - 1e4v (4,128 bytes)
5: <table><tr><td colspan='2'>[[1e4v]] is a 2 chain structure with sequence from [https://en.wi...
11: ... for maintenance and cell growth.[HAMAP-Rule:MF_00235]
13: [[Image:Consurf_key_small.gif|200px|right]]
20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
24: ...ng proteins. Mutants at these positions of H-ras-p21 cause cancer. In adenylate kinase these mutation... - 1e4i (5,527 bytes)
2: ==2-deoxy-2-fluoro-beta-D-glucosyl/enzyme intermediate comple...
3: ...ight'caption='[[1e4i]], [[Resolution|resolution]] 2.00Å' scene=''>
5: <table><tr><td colspan='2'>[[1e4i]] is a 1 chain structure with sequence fr...
6: ...Dat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr>
7: ...ene name='pdbligand=NFG:2,4-DINITROPHENYL+2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRANOSIDE'>NFG</scene></td></...
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