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1. Image:Proteins-cn.jpg (0 bytes)
2. Image:Proteins-cs.jpg (0 bytes)
3. Image:Proteins-quaternary.jpg (0 bytes)
4. Hiv env proteins (9,697 bytes)
   1: ...ht' caption='Molecular structure for the HIV-1 gp120 trimer in the unliganded state (PDB entry [[3dnn...
   3: ...he protein structure shown on the right is the gp120 portion of Env in its unbound trimer state <ref ...
   6: ...nv protein, as mentioned above, is composed of gp120 and gp41 that forms trimers on the viral membran...
   9: ...ently inducing fusion <ref name=Guan>PMID: 21076402 </ref>.
   11: == gp120 Binding ==
5. Knots in proteins (169 bytes)
6. Knots in Proteins: Methods (100 bytes)
   1: ...User:Eric_Martz/Sandbox_11]]. See also [[Knots in proteins]].
7. Category:Alpha and beta class of proteins with mainly parallell strand (92 bytes)
   1: ...of pages with the keyword Alpha and beta class of proteins with mainly parallell strand
8. Category:Designer Proteins (48 bytes)
   1: List of pages with the keyword Designer Proteins
9. Category:Chemotaxis binding proteins for active transport (79 bytes)
   1: List of pages with the keyword Chemotaxis binding proteins for active transport
10. User:James D Watson/Proteins Intro (3,070 bytes)
    1: ==Introduction to proteins==
    2: ...teaching. I will copy some of the info from the 5p21 page and use it here to expand details and bring...
    4: ==5p21 Overview==
    6: {{STRUCTURE_5p21 | PDB=5p21 | SCENE= }}
    8: ...e atoms are four times the average value of 16.1 A2 due to the multiple conformations. In one of thes...
11. Category:G Proteins (41 bytes)
    1: List of pages with the keyword G Proteins
12. Category:Ribosomal proteins s15 (53 bytes)
    1: List of pages with the keyword Ribosomal proteins s15
13. Category:Penicillin-binding Proteins (58 bytes)
    1: List of pages with the keyword Penicillin-binding Proteins
14. Category:Interaction coiled-doil proteins with globular protein (85 bytes)
    1: ...of pages with the keyword Interaction coiled-doil proteins with globular protein
15. Image:Proteins.gif (0 bytes)
16. Category:Electron transport proteins complex (66 bytes)
    1: List of pages with the keyword Electron transport proteins complex
17. Category:Degradation of proteins and peptide (66 bytes)
    1: List of pages with the keyword Degradation of proteins and peptide
18. Category:Yjgf proteins family (51 bytes)
    1: List of pages with the keyword Yjgf proteins family
19. James D Watson/Proteins Intro (48 bytes)
    1: #REDIRECT [[User:James D Watson/Proteins Intro]]
20. Class of globular proteins (31 bytes)
    1: #REDIRECT [[Globular Proteins]]

Page text matches

1. Main Page 20190127 (6,331 bytes)
   3: ...stern Daylight Time USA) till Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
   7: ...opedia will be in a READ-ONLY mode for Mar 18-21, 2017, in order to move Proteopedia to a better ser...
   11: ...yle="width:100%; background:#F5F5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;"
   13: <span style="font-size:2.0em; border:none; margin:0; padding:0.3em; color:...
   14: ...:5px;">The free, collaborative 3D-encyclopedia of proteins & other molecules</span>
2. Sandbox Dav 14 (1,103 bytes)
   1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
   8: ...1 beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The <scene name='Sandbox_Dav_14/Gf...
3. Sandbox dav 4 (1,378 bytes)
   1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
   6: ...1 beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The <scene name='Sandbox_dav_4/Gfp...
4. Acetylcholinesterase (8,905 bytes)
   1: ...h/2' caption='Torpedo california AChE (PDB code [[2ace]])'>
   8: ...reatment of [http://en.wikipedia.org/wiki/Protein proteins], such as
   13: ...er this binding acetylcholinesterase <scene name='2ace/Cv/7'>hydrolysizes</scene> ACh. <br />
   20: *[[Acetylcholinesterase complexed with N-9-(1',2',3',4'-tetrahydroacridinyl)-1,8-diaminooctane]].<...
   25: ...cleavage</scene> of the phosphonyl adduct from Ser200 Oγ.
5. Glycine (1,584 bytes)
   3: ...nal freedom and is frequently found in [[Turns in Proteins|turns]] along with [[proline]].
   8: ...rough layers of a large molecule. Even better for proteins are [[Backbone representations|schematic backbone...
6. Peptide (2,365 bytes)
   3: ... chains of amino acids are called polypeptides or proteins. Wikipedia offers a good discussion of [http://en...
   6: ...ick representation has too much detail for larger proteins, so the α-carbons are connected with a line call...
   18: ...lobin Tutorial] implemented with [[Jmol]] in July 2007.
7. Hemoglobin (21,535 bytes)
   1: ...and pink) β chain (green and yellow) with bound O2 [[1gzx]]" scene="Hemoglobin/Foursubunits/5" >
   3: ...metry <scene name='Hemoglobin/Alpha2beta2/7'>α2β2</scene>. The <scene name='Hemoglobin/Foursubunit...
   5: ...ins one <scene name='Hemoglobin/Deoxyheme_fe/9'>Fe2+</scene> atom. In the lungs, where oxygen is abun...
   9: ...is hemoglobin variant is termed 'hemoglobin S' ([[2hbs]]).
   11: ==Hemoglobin subunit binding O₂==
8. CHEM2052 Tutorial (6,397 bytes)
   1: ...in-triad/2' caption='α-chymoptrypsin (PDB code [[2cha]])'>
   2: == '''Chem2052: Example 3 - Serine Proteases''' ==
   6: ...mall differences in amino acid sequence among the proteins, which are reflected in their different specific...
   8: ...ser:Amy_Kerzmann/Sandbox_5/New_chymotrypsin-triad/2'>Chymotrypsin</scene>
   16: ...called a '''charge relay system''' <ref>PMID: 7016210</ref>.
9. NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol (8,927 bytes)
   1: ...H dehydrogenase complex with FAD and dicoumarol [[2f1o]]'>
   5: ...w.expasy.org/cgi-bin/nicezyme.pl?1.6.5.2 EC 1.6.5.2]) is a ubiquitous [http://medical-dictionary.thef...
   8: ...tin-independent_degradation ubiquitin-independent 20S proteasomal degradation]. Dicoumarol and severa...
   10: ...nt>). Therefore, each from these two <scene name='2f1o/Active_site/3'>dicoumarol-hNQO1 binding sites<...
   14: ...e <font color='blue'><b>apo hNQO1</b></font> to ~12 Å in the <font color='magenta'><b>dicoumarol/hNQ...
10. Help:Contents (6,488 bytes)
    2: ...ia:Overview|Overview]]) is the 3D encyclopedia of proteins and other biological molecules. This is the direc...
11. Proteopedia:About (7,060 bytes)
    1: <div class="toclimit-2">
    8: ...ce as a '''free, collaborative 3D-encyclopedia of proteins & other biomolecules.'''
    11: ...hare, retrieve and discuss information related to proteins, macromolecules, and small molecules and chemical...
    26: ...d #a3b0bf; text-align:left; color:#000; padding:0.2em 0.4em;">The Scoreboard</td></tr>
    31: ...nk], which contained >148,000 entries in January, 2019. Proteopedia is updated weekly with new entrie...
12. 2src (9,009 bytes)
    3: ...ion load='2src' size='340' side='right'caption='[[2src]], [[Resolution|resolution]] 1.50&Aring;' scen...
    5: ...</b> use [https://proteopedia.org/fgij/fg.htm?mol=2SRC FirstGlance]. <br>
    8: ...https://prosat.h-its.org/prosat/prosatexe?pdbcode=2src ProSAT]</span></td></tr>
    13: ...50</ref> <ref>PMID:21411625</ref> <ref>PMID:22710723</ref>
    15: [[Image:Consurf_key_small.gif|200px|right]]
13. 102l (2,926 bytes)
    3: ...n load='102l' size='340' side='right'caption='[[102l]], [[Resolution|resolution]] 1.74&Aring;' scene=...
    5: ...b> use [https://proteopedia.org/fgij/fg.htm?mol=102L FirstGlance]. <br>
    8: ...tps://prosat.h-its.org/prosat/prosatexe?pdbcode=102l ProSAT]</span></td></tr>
    11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
    13: [[Image:Consurf_key_small.gif|200px|right]]
14. 103l (2,925 bytes)
    5: <table><tr><td colspan='2'>[[103l]] is a 1 chain structure with sequence fr...
    11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
    13: [[Image:Consurf_key_small.gif|200px|right]]
    20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
15. 107l (2,925 bytes)
    5: <table><tr><td colspan='2'>[[107l]] is a 1 chain structure with sequence fr...
    11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
    13: [[Image:Consurf_key_small.gif|200px|right]]
    20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
16. 108l (2,925 bytes)
    5: <table><tr><td colspan='2'>[[108l]] is a 1 chain structure with sequence fr...
    11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
    13: [[Image:Consurf_key_small.gif|200px|right]]
    20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
17. 109l (2,926 bytes)
    5: <table><tr><td colspan='2'>[[109l]] is a 1 chain structure with sequence fr...
    11: ...and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
    13: [[Image:Consurf_key_small.gif|200px|right]]
    20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
18. 1mty (5,005 bytes)
    5: <table><tr><td colspan='2'>[[1mty]] is a 6 chain structure with sequence fr...
    13: [[Image:Consurf_key_small.gif|200px|right]]
    20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
    24: ...he two iron atoms are octahedrally coordinated by 2 histidine and 4 glutamic acid residues as well as...
    26: ...s. 1997 Oct;29(2):141-52. PMID:9329079<ref>PMID:9329079</ref>
19. 1e4v (4,128 bytes)
    5: <table><tr><td colspan='2'>[[1e4v]] is a 2 chain structure with sequence from [https://en.wi...
    11: ... for maintenance and cell growth.[HAMAP-Rule:MF_00235]
    13: [[Image:Consurf_key_small.gif|200px|right]]
    20: ...c.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the...
    24: ...ng proteins. Mutants at these positions of H-ras-p21 cause cancer. In adenylate kinase these mutation...
20. 1e4i (5,527 bytes)
    2: ==2-deoxy-2-fluoro-beta-D-glucosyl/enzyme intermediate comple...
    3: ...ight'caption='[[1e4i]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
    5: <table><tr><td colspan='2'>[[1e4i]] is a 1 chain structure with sequence fr...
    6: ...Dat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
    7: ...ene name='pdbligand=NFG:2,4-DINITROPHENYL+2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRANOSIDE'>NFG</scene></td></...

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