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- Image:Proteins-cn.jpg (0 bytes)
- Image:Proteins-cs.jpg (0 bytes)
- Image:Proteins-quaternary.jpg (0 bytes)
- Hiv env proteins (9,697 bytes)
1: ...gp120 trimer in the unliganded state (PDB entry [[3dnn]])' scene=''>
9: ...brane proteins, located beneath the gp120 surface proteins (located by the white arrow in F2.b), will underg...
12: ...ltiple contacts centered on residues Asp 368, Glu 370 and Trp427 of gp120, which are all conserved am...
13: [[Image:3D structure of the HIV-1 spike in complex with CD4...
17: ...coupled with roation of each <scene name='Hiv_env_proteins/B12_gp120_complex/1'>gp120</scene> monomer by ~20... - Knots in proteins (169 bytes)
- Knots in Proteins: Methods (100 bytes)
1: ...User:Eric_Martz/Sandbox_11]]. See also [[Knots in proteins]]. - Category:Alpha and beta class of proteins with mainly parallell strand (92 bytes)
1: ...of pages with the keyword Alpha and beta class of proteins with mainly parallell strand - Category:Designer Proteins (48 bytes)
1: List of pages with the keyword Designer Proteins - Category:Chemotaxis binding proteins for active transport (79 bytes)
1: List of pages with the keyword Chemotaxis binding proteins for active transport - User:James D Watson/Proteins Intro (3,070 bytes)
1: ==Introduction to proteins==
8: ...is facilitated by hydrogen bonds from residues Thr35, Gly60 and Lys16. A mechanism for rate enhanceme...
14: ... Kabsch W, Wittinghofer A, EMBO J. 1990 Aug;9(8):2351-9.
22: ...ghlights the sequence differences between the two proteins.
23: ... frame='true' align='left' script='James_D_Watson/Proteins_Intro/Superposition_ras_structures/1' /> - Category:G Proteins (41 bytes)
1: List of pages with the keyword G Proteins - Category:Ribosomal proteins s15 (53 bytes)
1: List of pages with the keyword Ribosomal proteins s15 - Category:Penicillin-binding Proteins (58 bytes)
1: List of pages with the keyword Penicillin-binding Proteins - Category:Interaction coiled-doil proteins with globular protein (85 bytes)
1: ...of pages with the keyword Interaction coiled-doil proteins with globular protein - Image:Proteins.gif (0 bytes)
- Category:Electron transport proteins complex (66 bytes)
1: List of pages with the keyword Electron transport proteins complex - Category:Degradation of proteins and peptide (66 bytes)
1: List of pages with the keyword Degradation of proteins and peptide - Category:Yjgf proteins family (51 bytes)
1: List of pages with the keyword Yjgf proteins family - Colored & Bioluminescent Proteins (1,279 bytes)
1: [[Image:GFP mice.png|350px|right|thumb| Mice with Green Fluorescent Prot...
3: [[Colored & Bioluminescent Proteins]] are known for their ability to fluoresce, like ...
7: ...Proteopedia concerning [[Colored & Bioluminescent Proteins]] include:
24: ...ded indices concerning [[Colored & Bioluminescent Proteins]] See: - Category:Circadian Clock Proteins (55 bytes)
1: List of pages with the keyword Circadian Clock Proteins
Page text matches
- Main Page 20190127 (6,331 bytes)
3: ... Daylight Time USA) till Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
13: ...font-size:2.0em; border:none; margin:0; padding:0.3em; color:#000;">Welcome to Proteopedia</span>
14: ...:5px;">The free, collaborative 3D-encyclopedia of proteins & other molecules</span>
15: ...t-size:1.2em; padding-right:5px;">'''''ISSN 2310-6301'''''</span>
19: ...font-size:1.5em; border:none; margin:0; padding:0.3em;font-weight:bold;"> [[Proteopedia:Table of Cont... - Sandbox Dav 14 (1,103 bytes)
1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
5: <applet load='1ema' size='300' frame='true' align='right' caption='GFP' />
8: ... beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The <scene name='Sandbox_Dav_14/Gfp... - Sandbox dav 4 (1,378 bytes)
1: ...395nm and 475nm). It is one of the most important proteins used in biological research because it can be use...
5: <applet load='1ema' size='300' frame='true' align='center' caption='gfp' />
6: ... beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The <scene name='Sandbox_dav_4/Gfp/...
11: == Related 3D structures ==
13: <Structure load='6OYH' size='350' frame='true' align='right' caption='Insert cap... - Acetylcholinesterase (8,905 bytes)
1: <StructureSection load='' size='350' side='right' scene='22/22/Ache_with_ach/2' cap...
8: ...reatment of [http://en.wikipedia.org/wiki/Protein proteins], such as
11: ...e:Synapse_Schematic.jpg|thumb|Cholinergic Synapse|300px|left]]
13: ...nd ligand] recognition <ref name="Raves">PMID:8989325</ref>. After this binding acetylcholinesterase ...
20: *[[Acetylcholinesterase complexed with N-9-(1',2',3',4'-tetrahydroacridinyl)-1,8-diaminooctane]].<br ... - Glycine (1,584 bytes)
1: <applet size="300" frame="true" caption="Glycine is the most simp...
3: ...nal freedom and is frequently found in [[Turns in Proteins|turns]] along with [[proline]].
8: ...rough layers of a large molecule. Even better for proteins are [[Backbone representations|schematic backbone... - Peptide (2,365 bytes)
3: ... chains of amino acids are called polypeptides or proteins. Wikipedia offers a good discussion of [http://en...
6: ...ick representation has too much detail for larger proteins, so the α-carbons are connected with a line call... - Hemoglobin (19,234 bytes)
1: ...on=" crystallographic structure of HbII- oxy [[3P31]]" scene="Hemoglobinits/5" >
5: <script> script /scripts/32/32/Subunits_1hho/1.spt;
9: ...osthetic group. The <scene name='Hemoglobin/4heme/3'>heme molecules</scene> give hemoglobin its red c...
15: ...in the β hemoglobin monomer from <scene name='32/32/Hemoglobins_1hho/9'>glutamic acid to a valine</s...
18: ...on-2 alpha helical sandwich structure vs the 3-on-3 of other Hbs<ref>PMID:11696555</ref> . - CHEM2052 Tutorial (6,397 bytes)
2: == '''Chem2052: Example 3 - Serine Proteases''' ==
4: ...of all known proteolytic enzymes <ref>PMID:17991683</ref>,<ref name="DiCera">PMID:19180666</ref>. Wit...
6: ...mall differences in amino acid sequence among the proteins, which are reflected in their different specific...
10: ...e='User:Amy_Kerzmann/Sandbox_5/New_elastase-triad/3'>Elastase</scene>
18: ... chymotrypsin to the <scene name='59/596400/Morph/3'>trypsin catalytic triad and the elastase catalyt... - NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol (8,927 bytes)
1: <StructureSection load='2f1o.pdb' size='350' frame='true' side='right' scene='2f1o/Com_view...
3: [[Image:NQO_Dic copy.jpg|border|left|300px]]
7: ...coumarin)),[[Image:Figure3 copy.jpg|border|center|300px]] is the most potent competitive inhibitor of...
8: ...of NQO1 to p53 and induce ubiquitin-independent p53 degradation.
10: ...each from these two <scene name='2f1o/Active_site/3'>dicoumarol-hNQO1 binding sites</scene> is formed... - Help:Contents (6,518 bytes)
2: ...ia:Overview|Overview]]) is the 3D encyclopedia of proteins and other biological molecules. This is the direc...
14: ... learn how to get the most out of the interactive 3D scenes, reference the [[Help:Viewing pages|Viewi...
37: ...i class="fas fa-cubes"></i> For authors: creating 3D scenes===
38: ... ([[Help:Uploading molecules]]). Tips how to make 3D scenes that have a lot of information yet are ea...
45: ...xt, embed videos, and integrate different data in 3D scenes, see [[Help:Multimedia]]. Proteopedia hos... - Proteopedia:About (7,060 bytes)
8: ...ce as a '''free, collaborative 3D-encyclopedia of proteins & other biomolecules.'''
11: ...hare, retrieve and discuss information related to proteins, macromolecules, and small molecules and chemical...
15: ...rnals via [[I3DC|Interactive 3D Complements - '''I3DCs''']].
26: ...size:1.25em; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#000; padding:0.2em 0...
61: <ref group='xtra'>PMID 18673581 </ref><references group='xtra'/> - 2src (9,009 bytes)
3: <StructureSection load='2src' size='340' side='right'caption='[[2src]], [[Resolution|re...
5: ....2210/rcsb_pdb/mom_2003_7 10.2210/rcsb_pdb/mom_2003_7]. The December 2004 RCSB PDB [https://pdb.rcsb....
13: ...0</ref> <ref>PMID:21411625</ref> <ref>PMID:22710723</ref>
19: ...ript /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
26: ...ly of the regulatory domains, induced by SH2 or SH3 ligands, or by dephosphorylation of Tyr-527, coul... - 102l (2,926 bytes)
3: <StructureSection load='102l' size='340' side='right'caption='[[102l]], [[Resolution|re...
11: ...nd break down the peptidoglycan layer.<ref>PMID:22389108</ref>
24: *[[Lysozyme 3D structures|Lysozyme 3D structures]] - 103l (2,925 bytes)
3: ...n load='103l' size='340' side='right'caption='[[103l]], [[Resolution|resolution]] 1.90Å' scene=...
5: ...b> use [https://proteopedia.org/fgij/fg.htm?mol=103L FirstGlance]. <br>
8: ...tps://prosat.h-its.org/prosat/prosatexe?pdbcode=103l ProSAT]</span></td></tr>
11: ...nd break down the peptidoglycan layer.<ref>PMID:22389108</ref>
16: ..._initial_scene = true; script "/wiki/ConSurf/03/103l_consurf.spt"</scriptWhenChecked> - 107l (2,925 bytes)
3: <StructureSection load='107l' size='340' side='right'caption='[[107l]], [[Resolution|re...
11: ...nd break down the peptidoglycan layer.<ref>PMID:22389108</ref>
24: *[[Lysozyme 3D structures|Lysozyme 3D structures]] - 108l (2,925 bytes)
3: <StructureSection load='108l' size='340' side='right'caption='[[108l]], [[Resolution|re...
11: ...nd break down the peptidoglycan layer.<ref>PMID:22389108</ref>
24: *[[Lysozyme 3D structures|Lysozyme 3D structures]] - 109l (2,926 bytes)
3: <StructureSection load='109l' size='340' side='right'caption='[[109l]], [[Resolution|re...
11: ...nd break down the peptidoglycan layer.<ref>PMID:22389108</ref>
24: *[[Lysozyme 3D structures|Lysozyme 3D structures]] - 1mty (5,005 bytes)
3: <StructureSection load='1mty' size='340' side='right'caption='[[1mty]], [[Resolution|re...
26: ...ns. 1997 Oct;29(2):141-52. PMID:9329079<ref>PMID:9329079</ref>
33: ...monooxygenase 3D structures|Methane monooxygenase 3D structures]] - 1e4v (4,128 bytes)
3: <StructureSection load='1e4v' size='340' side='right'caption='[[1e4v]], [[Resolution|re...
11: ...for maintenance and cell growth.[HAMAP-Rule:MF_00235]
24: ... kinases, H-ras-p21, and other nucleotide-binding proteins. Mutants at these positions of H-ras-p21 cause ca...
26: .... 1993 Jan;15(1):42-9. PMID:8451239<ref>PMID:8451239</ref>
33: ...[[Adenylate kinase 3D structures|Adenylate kinase 3D structures]] - 1e4i (5,527 bytes)
3: <StructureSection load='1e4i' size='340' side='right'caption='[[1e4i]], [[Resolution|re...
26: ... Lopez-Camacho C, Polaina J Proteins. 1998 Dec 1;33(4):567-76. PMID:9849940<ref>PMID:9849940</ref>
33: ...[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]]
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