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1. Image:CH464 PyMOL Presentation Mechanism1.png (0 bytes)
2. Image:CH464 PyMOL Presentation Mechanism (2).png (0 bytes)
3. Image:Pymol Correct Mutations.pse (0 bytes)
4. Image:CH464 PyMOL Presentation Mechanism.png (0 bytes)
5. Image:1B8M consurf pymol session.pse (0 bytes)
6. Image:Ace2 spike pymol.png (0 bytes)
7. Image:CH464 PyMOL Presentation Mechanism (3).png (0 bytes)
8. Image:2fkl pymol representation.png (113 bytes)
   2: pymol representation of 2fkl
9. Image:CH464 PyMOL Presentation Mechanism.jpeg (0 bytes)
10. PyMOL (4,176 bytes)
    1: ...scientific.com/ Warren DeLano]. Effective use of PyMOL requires that you become familiar with highly abb...
    3: ...of PyMOL that are not supported by Jmol. Also, as PyMOL continues to be developed, new fixes in Jmol will...
    5: ... provide [http://packages.debian.org/stable/pymol PyMOL packages] compiled from the open-source code.
    7: ...of the package. Python enables users to automate PyMOL with simple command scripts and to develop plugin...
    9: ...ains available for download, and that support for PyMOL is continuing. A statement similar to the followi...
11. Image:1KLN pymol.pdb (98 bytes)
12. Image:2KTQ pymol.pdb (34 bytes)
13. Image:3KTQ pymol.pdb (109 bytes)
14. Image:Pymol.png (0 bytes)
15. User:Wayne Decatur/4ay9 pymol (1,229 bytes)
    2: ===In PyMol===
    3: ...cture that in the paper is represented as a loop, PyMol was making a helix. It was small and not overly n...
    13: ...mol Posted Command Syntax and Atom Selections for PyMol]
    14: ...mol Posted Command Syntax and Atom Selections for PyMol with 'resi' used]
    15: ...ol.sourceforge.net/newman/user/S0260cartoons.html Pymol Users manual page on secondary structure]
16. User:Wayne Decatur/Sandbox 4ay9 pymol (43 bytes)
    1: #REDIRECT [[User:Wayne Decatur/4ay9 pymol]]
17. Image:1bl8-ABC-EPM-PyMOL-2.png (0 bytes)
18. Image:1bl8-ABC-EPM-PyMOL-1.png (0 bytes)
19. Image:1pgb-EPM-PyMOL.png (0 bytes)
20. Image:NTCP Protein Pymol.png (0 bytes)

Page text matches

1. Image:1xjo cartoon.png (42 bytes)
   1: Cartoon drawing of SGAP, 1xjo, using PyMOL
2. User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012 (17,130 bytes)
   4: ...ly scheduled for a previous date; however, it was moved to November 8th 2012 due to the University clos...
   89: * [http://pymol.org/ PyMol]
   92: ...n Jmol], more informative than [http://pymol.org/ PyMol]
   101: **PyMol: [http://www.pymolwiki.org/index.php/Distance Two ways]
   113: **PyMol
3. Missing residues and incomplete sidechains (25,887 bytes)
   2: ...et dealt with multiple-chain assemblies. I will remove this notice when I have done so. [[User:Eric Mar...
   11: ... during [[X-ray crystallography]] can sometimes remove atoms<ref name="damage">PMID: 10639129</ref>, an...
   31: [[Image:2ace-pymol-missing-nterm.png|105px]]
   43: [[PyMOL]]
   65: [[Image:2ace-pymol-missing-loop.png|154px]]
4. Image:HA Binding1.pse (94 bytes)
   1: ...reupload in a last ditch attempt to remove broken pymol labels
5. User:Boris Brumshtein (9,260 bytes)
   42: ...ar modeling, visualization and analysis software: PyMol, Coot, XtalView, O, CCP4, APBS.
6. Sculpting protein conformations (6,480 bytes)
   3: ...orphs|molecular morphing]] usually means saving a movie or animation that shows interpolated transition...
   9: ...versal force field''. This is demonstrated in the movie available at [http://tinyurl.com/sculpting-prot...
   22: ... version]. ''Minimize'' was not turned on in this movie.
   25: ==PyMOL==
   27: [[PyMOL]], originally developed by [[User:Warren DeLano|W...
7. Sandbox Reserved 702 (26,587 bytes)
   10: [[Image:1lvc.png|thumb|220px|left|PyMol representation of 1lvc]]
   120: ...ines of the active site (K346, K353 and K372) are moved upwards. Indeed, the edema factor helical domai...
   141: ... ion also stabilizes the reaction intermediate by moving towards the non-bridging oxygen of α-phosphat...
8. Molecular Playground/Nickel Superoxide Dismutase (4,609 bytes)
   24: ...humb|Fig. 2: Hexameric NiSOD. Figure created with PyMol. PDB ID [[1t6u]].]]
9. Image:Y21m08d20 msn2 0.pdb (85 bytes)
   1: pymol local structural alignment of dbd of msn2 and msn...
10. Image:Y21m08d20 msn2 align.pdb (51 bytes)
    1: alphafold msn2 msn4 aligned locally on dbd by pymol
11. Image:Q162R.jpeg (17 bytes)
    1: Q162R PyMol image
12. Image:S284A.jpeg (17 bytes)
    1: S284A PyMol image
13. Image:A285N.jpeg (17 bytes)
    1: A285N PyMol image
14. Image:CuII coordination complex.jpg (443 bytes)
    3: This figure was made thanks to pyMol program.
15. Image:1a1v on 1d9z 1-411.pdb (335 bytes)
    4: ... was superimposed on residues 1-411 or 1D9Z using Pymol's align command
16. Image:2fkl pymol representation.png (113 bytes)
    2: pymol representation of 2fkl
17. Sandbox Reserved 895 (30,318 bytes)
    14: ...Figure 1C''' was generated using PyMol. <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
    16: ... generated in PyMOL using PDB: ''4RSV'' <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
    18: ...tat outlined using PyMOL, PDB: ''4RSV'' <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
    44: ...two-stranded extension on blade III, generated in PyMol and shown in '''Figure 4'''. The top face of the ...
    46: ... using PyMol. <ref> DOI 19805034 </ref> <ref> The PyMOL Molecular Graphics System, Version 2.3.3, Schröd...
18. User:Eric Martz (29,816 bytes)
    435: *[[PyMOL]]
    621: *[[User:Eric Martz/Sandbox]] Movie tests
    628: *[[User:Eric Martz/Sandbox 7]] PyMOL translator notes
    639: *[[User:Eric Martz/Sandbox 18]] Saving from SAT removes FILTER command
19. Proteopedia:Wishlist (29,517 bytes)
    12: ...e, it would be nice to retain the links, and to remove the scrollable structure section (maybe replacin...
    15: ...a remark into PDB when returning a morph from the pymol morph server
    100: ... adding new display options, like 2 jmols, so I'm moving this up. - [[User:Kevin Karplus]] -18 Aug 2008...
    130: ...', one could, for example, select ''cys'', then remove ''cystine'' from selection, leaving ''cysteine''...
    150: ...n''' and add '''add to representation''' and '''remove from representation'''. This allows, for example...
20. Morphs (23,832 bytes)
    15: ...e phosphate dikinase]] with a [[#True_Movies|true-movie]] morph of the catalytic reaction and conformat...
    16: ...hotransferase System]] with a [[#True_Movies|true-movie]] morph of the catalytic reaction and conformat...
    32: ...y and Geometric Analysis, [http://molmovdb.org molmovdb.org], developed by Mark Gerstein and coworkers ...
    33: ...y and Geometric Analysis, [http://molmovdb.org molmovdb.org], developed by Mark Gerstein and coworkers ...
    54: ...nrhein, Schlauderer & Schultz<ref name='vonrhein'>Movie of the structural changes during a catalytic cy...

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