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Article title matches

Category:Samson J (39 bytes)
1: List of pages with the keyword Samson J
Category:Samson S (39 bytes)
1: List of pages with the keyword Samson S
Category:Samson, A O (42 bytes)
1: List of pages with the keyword Samson, A O
Category:Samson RY (40 bytes)
1: List of pages with the keyword Samson RY
Category:Samson, J (40 bytes)
1: List of pages with the keyword Samson, J
Category:Samson, L (40 bytes)
1: List of pages with the keyword Samson, L
Category:Samson, L D (42 bytes)
1: List of pages with the keyword Samson, L D
Category:Samson, S (40 bytes)
1: List of pages with the keyword Samson, S
Category:Samson, R Y (42 bytes)
1: List of pages with the keyword Samson, R Y
Category:Samson L (39 bytes)
1: List of pages with the keyword Samson L
Category:Samson, C (40 bytes)
1: List of pages with the keyword Samson, C
Category:Samson AO (40 bytes)
1: List of pages with the keyword Samson AO
Category:Samson LD (40 bytes)
1: List of pages with the keyword Samson LD
Image:1al1-sculpting-samson-v5-600px.mp4 (0 bytes)
Category:Samson C (39 bytes)
1: List of pages with the keyword Samson C
Category:Samson, A.O (42 bytes)
1: List of pages with the keyword Samson, A.O

Page text matches

1lb0 (9,495 bytes)
2: ==NMR Structure of HIV-1 gp41 659-671 13-mer peptide==
3: <StructureSection load='1lb0' size='340' side='right'caption='[[1lb0]]' scene=''>
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1LB0 FirstGlance]. 
6: ...d class="sblockDat" id="methodDat">Solution NMR</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=1lb0 ProSAT]</td></tr>
1lcx (7,374 bytes)
2: ==NMR structure of HIV-1 gp41 659-671 13mer peptide==
3: <StructureSection load='1lcx' size='340' side='right'caption='[[1lcx]]' scene=''>
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1LCX FirstGlance]. 
6: ...d class="sblockDat" id="methodDat">Solution NMR</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=1lcx ProSAT]</td></tr>
2esx (3,723 bytes)
2: ...egion within gp120 of JR-FL HIV-1 strain (minimized average structure)==
3: <StructureSection load='2esx' size='340' side='right'caption='[[2esx]]' scene=''>
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2ESX FirstGlance]. 
6: ...d class="sblockDat" id="methodDat">Solution NMR</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=2esx ProSAT]</td></tr>
2esz (3,704 bytes)
3: <StructureSection load='2esz' size='340' side='right'caption='[[2esz]]' scene=''>
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2ESZ FirstGlance]. 
6: ...d class="sblockDat" id="methodDat">Solution NMR</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=2esz ProSAT]</td></tr>
11: <div style="background-color:#fffaf0;">
1bnk (4,071 bytes)
2: ...UMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA==
3: <StructureSection load='1bnk' size='340' side='right'caption='[[1bnk]], [[Resolution|resolutio...
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1BNK FirstGlance]. 
6: ...ffraction, [[Resolution|Resolution]] 2.7Å</td></tr>
7: ...DIN-2-YLMETHYL-MONOPHOSPHATE+GROUP'>YRR</scene></td></tr>
1ewn (2,801 bytes)
2: ...AIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA==
3: <StructureSection load='1ewn' size='340' side='right'caption='[[1ewn]], [[Resolution|resolutio...
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1EWN FirstGlance]. 
6: ...ffraction, [[Resolution|Resolution]] 2.1Å</td></tr>
7: ...scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
1f4r (2,801 bytes)
2: ...AIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA==
3: <StructureSection load='1f4r' size='340' side='right'caption='[[1f4r]], [[Resolution|resolutio...
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1F4R FirstGlance]. 
6: ...ffraction, [[Resolution|Resolution]] 2.4Å</td></tr>
7: ...scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
1f6o (2,757 bytes)
2: ...E HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA==
3: <StructureSection load='1f6o' size='340' side='right'caption='[[1f6o]], [[Resolution|resolutio...
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1F6O FirstGlance]. 
6: ...ffraction, [[Resolution|Resolution]] 2.4Å</td></tr>
7: ...DIN-2-YLMETHYL-MONOPHOSPHATE+GROUP'>YRR</scene></td></tr>
Sculpting protein conformations (6,480 bytes)
1: ...to drag portions of the original model into desired conformations.
3: ...teopedia. Slides explaining how to morph a sculpted protein are available at [http://tinyurl.com/scul...
6: ==Samson==
7: ...ain fixed during dragging. A video showing how to do this, step by step, is available at [http://tiny...
9: ...aphene-and-proteins/ Simulating small molecules and proteins]).
1l4w (5,394 bytes)
2: ...R-peptide (Torpedo Californica, alpha-subunit residues 182-202) in complex with alpha-Bungarotoxin==
3: <StructureSection load='1l4w' size='340' side='right'caption='[[1l4w]]' scene=''>
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1L4W FirstGlance]. 
6: ...sblockDat" id="methodDat">Solution NMR, 1 model</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=1l4w ProSAT]</td></tr>
1ljz (3,856 bytes)
2: ...R-peptide (Torpedo Californica, alpha-subunit residues 182-202) in complex with alpha-Bungarotoxin==
3: <StructureSection load='1ljz' size='340' side='right'caption='[[1ljz]]' scene=''>
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1LJZ FirstGlance]. 
6: ...lockDat" id="methodDat">Solution NMR, 19 models</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=1ljz ProSAT]</td></tr>
7ndy (5,523 bytes)
2: ...-Autointegration Factor (BAF) in complex with LEM domain of Emerin==
3: ...n load='7ndy' size='340' side='right'caption='[[7ndy]], [[Resolution|resolution]] 1.44Å' scene=...
5: ...b> use [https://proteopedia.org/fgij/fg.htm?mol=7NDY FirstGlance]. 
6: ...fraction, [[Resolution|Resolution]] 1.44Å</td></tr>
7: ...me='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
4glk (2,935 bytes)
2: ... and activity of AbiQ, a lactococcal anti-phage endoribonuclease belonging to the type-III toxin-anti...
3: <StructureSection load='4glk' size='340' side='right'caption='[[4glk]], [[Resolution|resolutio...
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=4GLK FirstGlance]. 
6: ...fraction, [[Resolution|Resolution]] 2.16Å</td></tr>
7: ...scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
2bna (1,262 bytes)
2: ==STRUCTURE OF A B-DNA DODECAMER AT 16 KELVIN==
3: <StructureSection load='2bna' size='340' side='right'caption='[[2bna]], [[Resolution|resolutio...
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2BNA FirstGlance]. 
6: ...ffraction, [[Resolution|Resolution]] 2.7Å</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=2bna ProSAT]</td></tr>
Category:Samson J (39 bytes)
1: List of pages with the keyword Samson J
User:Eric Martz (29,816 bytes)
1: {| class="wikitable" align="right" width="300"
2: |[[Image:Eric 1Day Workshop Osaka2009 small.jpg|300px]]
4: ...nomachine Group. Photograph courtesy of [[Proteopedia:Scrapbook#Workshops|Akihiro Kawamoto]].
13: NEW PAGES NEEDED:
15: PDBRedo (on Quality & Retractions)
1lk1 (2,408 bytes)
1: {{Theoretical_model}}
3: ...MODEL OF THE ACETYLCHOLINE RECEPTOR EXTRACELLULAR DOMAIN IN COMPLEX WITH TWO ALPHA-BUNGAROTOXIN MOLEC...
4: <StructureSection load='1lk1' size='340' side='right'caption='[[1lk1]]' scene=''>
6: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=1LK1 FirstGlance]. 
7: ...rg/prosat/prosatexe?pdbcode=1lk1 ProSAT]</td></tr>
Molecular modeling and visualization software (8,477 bytes)
1: ==Visualization vs. Modeling==
3: ...or removing moieties, changing covalent bonds, bond angles, conformation, or non-covalent interaction...
7: ...ee molecular visualization software packages include:
9: .... Effective use of Jmol requires learning a command scripting language.
10: ... of a macromolecule '''without learning any command scripting language'''. [[FirstGlance in Jmol|More...
2w2u (3,665 bytes)
2: ...INTO THE INTERACTION BETWEEN ARCHAEAL ESCRT-III AND AAA-ATPASE==
3: <StructureSection load='2w2u' size='340' side='right'caption='[[2w2u]], [[Resolution|resolutio...
5: ...the structure components use [https://proteopedia.org/fgij/fg.htm?mol=2W2U FirstGlance]. 
6: ...ffraction, [[Resolution|Resolution]] 2.2Å</td></tr>
7: ...rg/prosat/prosatexe?pdbcode=2w2u ProSAT]</td></tr>
Category:Samson S (39 bytes)
1: List of pages with the keyword Samson S

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