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- User:Wayne Decatur/Biochem642 Molecular Visualization Sessions (7,036 bytes)
2: ...of the structure and function of [[Ribosome|the ribosome structure]].
8: *[http://www.pdb.org The Protein Data Bank]
9: ...p=general_information/pdb_statistics/index.html PDB Statistics]
10: **search 1d66 - display text of PDB file
11: *[http://www.umass.edu/microbio/chime/top5.htm MolviZ "Top 5"] item III shows u... - User:Wayne Decatur/Biochem642 Molecular Visualization 2010 Fall Sessions (9,196 bytes)
2: ...nformation about class today and next week and problem sets
3: *Importance of Structural Biology
6: ...of the structure and function of [[Ribosome|the ribosome structure]].
7: ==Structural Biology for Non-structural Biologists==
8: *[http://www.umass.edu/microbio/chime/top5.htm MolviZ "Top 5"] - Category:Sessions AO (42 bytes)
1: List of pages with the keyword Sessions AO - Category:Sessions, R B (44 bytes)
1: List of pages with the keyword Sessions, R B - Category:Sessions, A O (44 bytes)
1: List of pages with the keyword Sessions, A O - Category:Sessions, R (42 bytes)
1: List of pages with the keyword Sessions, R - Category:Sessions R (41 bytes)
1: List of pages with the keyword Sessions R - Category:Sessions, R.B (44 bytes)
1: List of pages with the keyword Sessions, R.B - Category:Sessions, A.O (44 bytes)
1: List of pages with the keyword Sessions, A.O - Category:Sessions RB (42 bytes)
1: List of pages with the keyword Sessions RB
Page text matches
- Wittman Gal4 Sandbox (1,419 bytes)
3: {{STRUCTURE_1d66| PDB=1d66 | SCENE= }}
5: ===DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX===
7: {{ABSTRACT_PUBMED_1557122}}
9: ==About this Structure==
10: ... is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D66 OCA]. - 1oc4 (4,493 bytes)
2: ==Lactate dehydrogenase from Plasmodium berghei==
5: ...oteopedia.org/fgij/fg.htm?mol=1OC4 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=OXM:OXAMIC+ACID'>OXM</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oc4 ProSAT]</span></td></tr> - Teaching Scenes, Tutorials, and Educators' Pages (12,171 bytes)
1: ...e. Below is a list of such pages. Note that pages by students are listed separately at [[Student Proj...
3: To '''Search this page''', use your browser's ''Find'' function (Windows: Ctrl-F; Mac: ...
5: ...ed]] from edits by others, but their contents may be '''freely copied and adapted into other pages'''...
7: ==Pages by Educators==
10: See a longer list at [[About Macromolecular Structure]] which includes topi... - 1i0z (4,412 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=1I0Z FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=OXM:OXAMIC+ACID'>OXM</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i0z ProSAT]</span></td></tr>
9: </table> - 1i10 (4,795 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=1I10 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=OXM:OXAMIC+ACID'>OXM</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i10 ProSAT]</span></td></tr>
9: </table> - 1t2f (5,373 bytes)
2: ...xed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid==
5: ...oteopedia.org/fgij/fg.htm?mol=1T2F FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...me='pdbligand=OXQ:4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC+ACID'>OXQ</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2f ProSAT]</span></td></tr> - 1b94 (3,590 bytes)
3: ...on load='1b94' size='340' side='right'caption='[[1b94]], [[Resolution|resolution]] 1.90Å' scene...
5: ...oteopedia.org/fgij/fg.htm?mol=1B94 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...d class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
8: ...ttps://prosat.h-its.org/prosat/prosatexe?pdbcode=1b94 ProSAT]</span></td></tr> - 1b95 (3,503 bytes)
2: ...NDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP==
3: ...on load='1b95' size='340' side='right'caption='[[1b95]], [[Resolution|resolution]] 2.05Å' scene...
5: ...oteopedia.org/fgij/fg.htm?mol=1B95 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ttps://prosat.h-its.org/prosat/prosatexe?pdbcode=1b95 ProSAT]</span></td></tr> - 1b96 (3,502 bytes)
2: ...NDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP==
3: ...on load='1b96' size='340' side='right'caption='[[1b96]], [[Resolution|resolution]] 2.30Å' scene...
5: ...oteopedia.org/fgij/fg.htm?mol=1B96 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ttps://prosat.h-its.org/prosat/prosatexe?pdbcode=1b96 ProSAT]</span></td></tr> - 1b97 (3,502 bytes)
2: ...NDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP==
3: ...on load='1b97' size='340' side='right'caption='[[1b97]], [[Resolution|resolution]] 1.90Å' scene...
5: ...oteopedia.org/fgij/fg.htm?mol=1B97 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ttps://prosat.h-its.org/prosat/prosatexe?pdbcode=1b97 ProSAT]</span></td></tr> - 1ceq (4,253 bytes)
2: ==CHLOROQUINE BINDS IN THE COFACTOR BINDING SITE OF PLASMODIUM FALCIPARUM LACTATE DEHYD...
5: ...oteopedia.org/fgij/fg.htm?mol=1CEQ FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ceq ProSAT]</span></td></tr>
8: </table> - 1cet (4,833 bytes)
2: ==CHLOROQUINE BINDS IN THE COFACTOR BINDING SITE OF PLASMODIUM FALCIPARUM LACTATE DEHYD...
5: ...oteopedia.org/fgij/fg.htm?mol=1CET FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...d class="sblockDat" id="ligandDat"><scene name='pdbligand=CLQ:N4-(7-CHLORO-QUINOLIN-4-YL)-N1,N1-DIETH...
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cet ProSAT]</span></td></tr> - Beck Gal4 sandbox (2,381 bytes)
1: == Your Heading Here (maybe something like 'Structure') ==
2: ...right' caption='Structure of HMG-CoA reductase (PDB entry [[1dq8]])' scene=''>
3: ...r adjacent to the 3D structure and will be scrollable.
9: {{STRUCTURE_1d66| PDB=1d66 | SCENE= }}
11: ===DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX=== - 1t24 (5,823 bytes)
2: ...xed with NAD+ and 4-hydroxy-1,2,5-oxadiazole-3-carboxylic acid==
5: ...oteopedia.org/fgij/fg.htm?mol=1T24 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...me='pdbligand=OXQ:4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC+ACID'>OXQ</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t24 ProSAT]</span></td></tr> - 1t25 (5,818 bytes)
2: ...e complexed with NADH and 3-hydroxyisoxazole-4-carboxylic acid==
5: ...oteopedia.org/fgij/fg.htm?mol=1T25 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...bligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLE...
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t25 ProSAT]</span></td></tr> - 1t26 (5,427 bytes)
2: ...ed with NADH and 4-hydroxy-1,2,5-thiadiazole-3-carboxylic acid==
5: ...oteopedia.org/fgij/fg.htm?mol=1T26 FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...LE-3-CARBOXYLIC+ACID'>GBD</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLE...
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t26 ProSAT]</span></td></tr> - 1t2c (5,341 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=1T2C FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...bligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLE...
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2c ProSAT]</span></td></tr>
9: </table> - 1t2d (5,394 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=1T2D FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=OXL:OXALATE+ION'>OXL</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2d ProSAT]</span></td></tr>
9: </table> - 1t2e (5,426 bytes)
5: ...oteopedia.org/fgij/fg.htm?mol=1T2E FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=OXM:OXAMIC+ACID'>OXM</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t2e ProSAT]</span></td></tr>
9: </table> - 1u4o (4,774 bytes)
2: ... dehydrogenase complexed with 2,6-naphthalenedicarboxylic acid==
5: ...oteopedia.org/fgij/fg.htm?mol=1U4O FirstGlance]. <br>
6: ...>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resol...
7: ...>MPD</scene>, <scene name='pdbligand=NDD:2,6-DICARBOXYNAPHTHALENE'>NDD</scene></td></tr>
8: ...um], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u4o ProSAT]</span></td></tr>
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