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- Image:Keratin-secondary-structure.png (191 bytes)
- Image:3D structure of the HIV-1 spike in complex with CD4 and 17b- Fab.png (290 bytes)
2: ...ub 2008 Jul 30. PMID:18668044 doi:10.1038/nature07159 Figure 3 - Image:2ndary structure PET Hydrolase.png (0 bytes)
- Category:Structure-guided drug design (59 bytes)
1: List of pages with the keyword Structure-guided drug design - Category:Thaumatin structure at a wavelength of 2 some (76 bytes)
1: List of pages with the keyword Thaumatin structure at a wavelength of 2 some - Category:Agu structure (44 bytes)
1: List of pages with the keyword Agu structure - Image:Structure.jpeg (0 bytes)
- Image:Amylin Receptor Structure.png (0 bytes)
- Image:Structure complex gp41-post 1281Fab.png (340 bytes)
2: ... 2010 Dec;17(12):1486-91. Epub 2010 Nov 14. PMID:21076402 Figure 4 - Image:Selectin Structure.png (0 bytes)
- Image:Aib Structure.png (0 bytes)
- Image:OspC General Structure.png (0 bytes)
- Category:Sulfur metabolism/ adenylylsulfate reductase/ iron-sulfur flavoprotein/ crystal structure/catalysis (130 bytes)
1: ...fate reductase/ iron-sulfur flavoprotein/ crystal structure/catalysis - Category:Molecular structure (50 bytes)
1: List of pages with the keyword Molecular structure - Category:Mrna structure (45 bytes)
1: List of pages with the keyword Mrna structure - Category:Hemoprotein structure (52 bytes)
1: List of pages with the keyword Hemoprotein structure - Category:Crystal structure (53 bytes)
1: List of structures with the keyword Crystal structure - Category:Solution structure (54 bytes)
1: List of structures with the keyword Solution structure - Category:Rna structure (49 bytes)
1: List of structures with the keyword Rna structure - Category:Water structure (51 bytes)
1: List of structures with the keyword Water structure
Page text matches
- Main Page 20190127 (6,331 bytes)
2: <div style="font-size:1.5em;border:1px solid #ddd;background-color:yellow;">Server mai...
3: ...rn Daylight Time USA) till Monday, July 23, 2012 11:30am EDT (Eastern Daylight Time USA)
7: ...edia will be in a READ-ONLY mode for Mar 18-21, 2017, in order to move Proteopedia to a better serve...
11: ...F5FC; margin-top:1.2em; margin-left:0.4em; border:1px solid #ddd;"
12: | style="width:61%; color:#000;" | - Telomerase Reverse Transcriptase (5,665 bytes)
7: It was discovered in 1985 by Freider and Blackburn in ''Tetrahymena''. B...
8: ... essential N-terminal (TEN) domain'''. <ref>PMID: 16462747</ref>
20: ...in space group P3 with <scene name='Sandbox/Three/1'>three</scene> TERT molecules present in the crys...
22: ...efore, additional <scene name='Sandbox/Methionine/1'>methionine residues</scene> were engineered into...
25: Therefore this region (residues 177-191) is flexible in solution and needs a macromolecul... - Sandbox Dav 14 (1,103 bytes)
1: ...from the jellyfish Aequorea victoria (PDB entry [[1ema]]), fluorsceses green (509nm) when exposed to ...
3: == Exploring the Structure ==
5: <applet load='1ema' size='300' frame='true' align='right' caption...
8: ... amino acids. The <scene name='Sandbox_Dav_14/Gfp/1'>TextToBeDisplayed</scene>, responsible for the f... - Sandbox dav 4 (1,378 bytes)
1: ...from the jellyfish Aequorea victoria (PDB entry [[1ema]]), fluorsceses green (509nm) when exposed to ...
4: == Exploring the Structure ==
5: <applet load='1ema' size='300' frame='true' align='center' captio...
6: ...8 amino acids. The <scene name='Sandbox_dav_4/Gfp/1'>chormophore</scene>
7: ...gh the barrel. The <scene name='Sandbox_dav_4/Gfp/1'>chromophore</scene> - Help:Editing (24,612 bytes)
34: ... If you get '''XML Error: Mismatched tags at line 1''' ===
46: ...e in the next section below. When there is a Jmol structure applet present in the page, you create new scenes...
50: When there is more than one Jmol structure applet on a page, scenes automatically go to the ...
52: ==Proteopedia Jmol Structure Applets==
53: ...ters. You may sometimes see 'applet' in place of 'Structure' at the start of the code on older pages as this ... - Acetylcholinesterase (8,905 bytes)
1: <StructureSection load='' size='350' side='right' scene='22/...
2: [[Image:small_wh_ray0001.gif|left|150px]]<br />
8: ...ues in acetylcholinesterase]]. Solution of the 3D structure of acetylcholinesterase led to a series of theore...
13: ...r200, His440, and Glu327)</scene> (ACh/''Tc''AChE structure [[2ace]]). The residues <scene name='2ace/Cv/6'>T...
18: ... degeneration of its neurons. AD occurs in around 10% of the elderly and, as yet, there is no known c... - Sandbox Tst (3,047 bytes)
1: ==Your Heading Here (maybe something like 'Structure')==
2: ... frame='true' spin='on' Scene ='1som/Ache_soman/1' side='right' caption='AChE complex with soman'>
4: [[Image:1som.jpg|left|200px]]<br />
8: ...substrates]], [[2wfz]], [[2wg0]], [[2wg1]], and [[1cfj]])
18: ...Phe290. The active sites of aged sarin-TcAChE ([[1cfj]]) and soman-TcAChE were essentially identical... - 3by5 (2,483 bytes)
2: ==Crystal structure of cobalamin biosynthesis protein chiG from Agrob...
3: <StructureSection load='3by5' size='340' side='right'caption...
5: ...cashort?id=3BY5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/...
6: ...y diffraction, [[Resolution|Resolution]] 2.52Å</td></tr>
8: .../3by5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3by5 RCSB], [https://www.ebi.ac.uk/pdbsum/3by5 ... - Glycine (1,584 bytes)
1: ... align="right" scene='Glycine/Emartz_ballandstick/1' />
6: *The <scene name='Glycine/Emartz_ballandstick/1'>ball and stick</scene> (also called "ball and sp...
7: ...heir [[van der Waals radii]]) and shape but hides structure behind the surface.
8: * The <scene name='Glycine/Emartz_stick/1'>stick</scene> representation shows only bonds, a...
9: ... part of the <scene name='Glycine/Emartz_backbone/1'>peptide backbone (main chain)</scene> are highli... - Peptide (2,365 bytes)
1: <applet load="" scene="Peptide/Emartz_view1/8" size="500" color="white" frame="true" caption=...
6: ... of the protein chain (its secondary and tertiary structure).
10: *[[Basics of Protein Structure]]
18: ...utorial] implemented with [[Chime]] in September, 1997, and a [http://molviz.org/hemoglobin Hemoglobi... - Hemoglobin (19,234 bytes)
1: ...n=" crystallographic structure of HbII- oxy [[3P31]]" scene="Hemoglobinits/5" >
5: <script> script /scripts/32/32/Subunits_1hho/1.spt;
9: ...//7'>α2β2</scene>. The <scene name='Hemoglobin/1subunits/5'>2 subunits</scene> , facing each other...
15: ...lobin monomer from <scene name='32/32/Hemoglobins_1hho/9'>glutamic acid to a valine</scene>. This he...
16: ...hemoglobin''' found in neural tissue and contains 109 residues<ref>PMID:9642264</ref> . - Ann Taylor/Hemoglobin (7,712 bytes)
1: ...yellow) with bound O2 [[1gzx]]" scene="Hemoglobin/1gzx/2" >
2: ...each other across a <scene name='57/576710/Cavity/1'>cavity</scene> at the center of the molecule. Ea...
4: ... resulting in the iron moving <scene name='57/576710/Oxy_fe_planarity/3'>into the plane</scene> of th...
6: ...ygen binds to just one subunit, then its internal structure undergoes some but not all of these changes, depe...
11: ...in monomer from <scene name='57/576710/Glu_to_val/1'>glutamic acid to a valine</scene>. This hemoglo... - CHEM2052 Tutorial (6,397 bytes)
1: <StructureSection load='' size='450' side='right' scene='Use...
4: ...ref>PMID:17991683</ref>,<ref name="DiCera">PMID:19180666</ref>. Within the diverse collection of seri...
6: ...erine proteases are a classic example of how '''''structure dictates function'''''!
14: * Mouse over or click on the structure to determine the residue numbers for the catalyti...
15: ...own the shift key while you click and drag on the structure. Alternatively, you can click on the Jmol symbol ... - 1zk8 (2,708 bytes)
2: ...anscriptional regulator from Bacillus cereus ATCC 14579==
3: ...ht'caption='[[1zk8]], [[Resolution|resolution]] 2.15Å' scene=''>
5: ...</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZK8 FirstGlance]. <br>
6: ...y diffraction, [[Resolution|Resolution]] 2.15Å</td></tr>
8: ...k8 ProSAT], [https://www.topsan.org/Proteins/MCSG/1zk8 TOPSAN]</span></td></tr> - 1zkd (2,724 bytes)
2: ...om Rhodopseudomonas palustris at the resolution 2.1 A , Northeast Structural Genomics Consortium targ...
3: ...ht'caption='[[1zkd]], [[Resolution|resolution]] 2.10Å' scene=''>
5: ...</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZKD FirstGlance]. <br>
6: ...ay diffraction, [[Resolution|Resolution]] 2.1Å</td></tr>
8: ...d ProSAT], [https://www.topsan.org/Proteins/NESGC/1zkd TOPSAN]</span></td></tr> - Acetylcholine (3,078 bytes)
3: <applet load='Ach1.pdb' size='400' frame='true' align='right'
4: scene='Acetylcholine/Cv/1' />
14: ...0, His440, and Glu327)</scene> of (ACh/''Tc''AChE structure [[2ace]]). The residues <scene name='2ace/Cv/6'>T... - NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol (8,927 bytes)
1: ...dehydrogenase complex with FAD and dicoumarol [[2f1o]]'>
2: ...stal structure of NADH quinone oxidoreductase (NQO1) in complex with its potent inhibitor dicoumarol ...
5: ...p://www.expasy.org/cgi-bin/nicezyme.pl?1.6.5.2 EC 1.6.5.2]) is a ubiquitous [http://medical-dictionar...
6: .... The NAD(P)H and the quinone binding sites of NQO1 have a significant overlap, thus providing a mole...
7: ...icoumarol competes with NAD(P)H for binding to NQO1 and prevents the [http://en.wikipedia.org/wiki/El... - Help:Contents (6,518 bytes)
9: ...the [[Main Page]] or the table of contents or the structure index available in the navigation box on the left...
14: ...learn more about them. The [[About Macromolecular Structure]] page is a good place to start.
38: ... structure not in the PDB, you have to upload the structure first ([[Help:Uploading molecules]]). Tips how to...
55: ...utorials, and Educators' Pages]], [[How To Find A Structure]], and if applicable, [[High school teachers' res... - Proteopedia:About (7,060 bytes)
25: <table border='1'>
26: ...7D7FE; font-size:1.25em; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#000; pad...
31: ...], which contained >148,000 entries in January, 2019. Proteopedia is updated weekly with new entries ...
34: ...]. There are also articles [[About Macromolecular Structure]].
60: <ref group='xtra'>doi 10.1016/j.jsb.2011.04.011</ref> - Streptomyces griseus Aminopeptidase (SGAP) (9,198 bytes)
1: ...osphate, Ca+2 (green) and Zn+2 (grey) (PDB code [[1xjo]])'>
3: [[Image:1xjo_cartoon.png |left| 200px | thumb | S griseus a...
7: ...'S. griseus'' [[Aminopeptidase]] (SGAP; E.C. 3.4.11.-) cleaves the N-terminal amino acid from a pepti...
13: ... α/β fold, consisting of a 3-layer <scene name='1xjo/Sandwich/2'>αβα sandwich </scene>.
15: ...h His85 and Asp160 as ligands for one ion, and Glu132 and His247 as ligands for the second ion. Asp9...
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