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1. Image:Fatcat-interactive-viewer-button.png (0 bytes)
2. User:Jaime Prilusky/Test/Viewer (2,613 bytes)
   1: <SX load='1stp' size='400' side='right' viewer='molstar' caption='Caption for this structure' >_...
   2: ==Selection of viewer engine==
   3: ...e browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D [http://jmol.org] <...
   5: ...ed additional development to work under different viewers, like &lt;scene>, initialView and SAT. Examples ...
   7: ...pdbe/litemol PDBe]], should be Ok for the MolStar viewer in use.

Page text matches

1. Scene authoring tools (23,035 bytes)
   18: ...t someone viewing the page can load into the Jmol viewer by clicking on green links. A scene stores viewp...
   24: ...e it is centered in a way to make it easy for the viewer to explore.
   30: ...le the right side of the user interface is a Jmol viewer to preview the scene as it is built.
   35: [[Image:Load_molecule.png|thumb|The load molecule tab in action]]
   42: ...ol's "load" command. For example, you can load a .PNGJ file to load coordinates and a 3D scene in one s...
2. FirstGlance in Jmol Literature Citations (31,234 bytes)
   17: ...9100 FirstGlance YouTube Channel] [[Image:Youtube.png]]
   69: [[Image:Sefid-consurf-teplizumab-2025.png]]
   78: [[Image:Garcia-e-lyta-fig5-microorgs2025.png|300px]]
   95: [[Image:Martinez-alcantar-2024-fig1-1ol5.png|500px]]
   119: ... et al 2024 Fig3C Isolated domain from AlphaFold2.png|400px]]
3. User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012 (17,130 bytes)
   74: * [[Special:Upload]] List of allowed file types: png, jpg, jpeg, tiff, tif, gif, mgif, pdb, cif, mmcif...
   205: ...s 'View the docking solutions in a Jmol structure viewer.', see example run http://haddock.chem.uu.nl/Hadd...
4. Missing residues and incomplete sidechains (25,887 bytes)
   4: ...] makes it less likely, compared to other popular viewers, to overlook missing parts. '''[[AlphaFold| Alph...
   22: Unlike other viewers, [[FirstGlance in Jmol]] ensures that you are aw...
   29: [[Image:2ace-fg-missing-nterm.png]]
   31: [[Image:2ace-pymol-missing-nterm.png|105px]]
   33: [[Image:2ace-chimerax-missing-nterm.png|128px]]
5. User:Karsten Theis/Showcase (4,137 bytes)
   10: ...s. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this...
6. Image:3KG2-snapshot-900x900-14724.jpg (143 bytes)
   1: made 3kg2 at the Jena3D Viewer http://jena3d.fli-leibniz.de/ heremitelevel set ...
7. User:Karl Oberholser (4,609 bytes)
   46: *[http://jena3d.fli-leibniz.de/ Jena3D Viewer]
8. Clashes (5,111 bytes)
   27: ...alization of clashes in [http://nglviewer.org NGL Viewer]. Caution: In November, 2021, the percentile rank...
9. Conservation, Evolutionary (18,591 bytes)
   138: ===Evolutionary Trace Viewer===
   140: ...tion.lichtargelab.org/ETviewer Evolutionary Trace Viewer] (ETV).<!--
   143: ...derstand what the ETV is doing, or how to use the viewer. An explanation in simple terms for non-specialis...
10. Biological Unit (16,185 bytes)
    122: ...hain is given a distinct name. RCSB also offers a viewer named Kiosk but this seems not to show the biolog...
11. User:James D Watson/Proteins Intro (3,070 bytes)
    22: ...ty is only 29.6% (as determined using FASTA). The viewer below right shows the p-loops of both structures ...
12. User:J. Shaun Lott/BIOSCI 203 (5,010 bytes)
    9: ... view of a protein structure shown using the Jmol viewer within [http://proteopedia.org/wiki/index.php/Mai...
13. User:Wayne Decatur/UNH BCHEM833 Structural Proteomics Introductory Lecture Fall 2012 (10,233 bytes)
    35: ...alization and Viewers|Molecular Visualization and Viewers]]
    52: ==Molecular Visualization and Viewers==
    56: *[http://jena3d.fli-leibniz.de/ Jena3D Viewer]
    59: *[http://spdbv.vital-it.ch/ DeepView - Swiss-PdbViewer]
14. User:Tom Gluick (973 bytes)
    1: ...ewer and explore properties of proteins using the viewer and other web based tools. After a stint with Sm...
15. User:Tom Gluick/Glutamine synthetase (881 bytes)
    3: ...ty of learning a difficult but powerful structure viewer. In this exercise, you will learn how to set up a...
16. User:Tom Gluick/glutamine synthetase (32,696 bytes)
    91: ...set representation.<br/>[[Image:active_site_still.png]]
    100: [[Image:Salt bridge.png]]
    172: ...="color:red"> learn</span> how to use a structure viewer <br/>
    211: ...ver did load the molecule, and SPICE did, but the viewer is complicated to operate. Your experience may be...
17. R/S nomenclature (1,334 bytes)
    10: ...rity 4 substituent is placed facing away from the viewer (as in the initial scenes), and the rotation goin...
18. User:Eric Martz/Sandbox 0 (9,707 bytes)
    54: ... the ends fixed), which can be played in OpenAstexViewer, or downloaded as a multiple-model PDB file, e.g....
    55: ..., moving away from the browser tab containing the viewer causes the view to disappear when you return, and...
19. User:Wayne Decatur (11,404 bytes)
    185: *[http://jena3d.fli-leibniz.de/ Jena3D Viewer]
20. Proteopedia:Cookbook (15,260 bytes)
    50: | [[Image:1cjq.png|left|200px|]]
    51: | [[Image:1stp.png|left|200px|]]
    55: | [[Image:1cjq.png|left|200px]]
    56: | [[Image:1stp.png|left|200px]]
    93: ...ight be appropriate to mention that to the reader/viewer for better visibility.

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