Student Project 3 for UMass Chemistry 423 Spring 2015

by Jacob Kellett, Leah Caffrey, Patrick Harney, Bridget Kilkenny, Brandon Kittredge, Matthew Long

Student Projects for UMass Chemistry 423 Spring 2015

Introduction

Opioid receptors are a group of G-protein coupled receptors located almost fully within the cell membrane. [9] There are three different subtypes of opioid receptors: δ, κ, and μ, with the focal point of this page being the kappa receptor (KOR). [10] The of the protein can be observed in the interactive image to the right. The purple and gray dyed helices represent hydrophilic and hydrophobic regions of the molecule, respectively. The majority of the alpha helices are exposed hydrophobic regions that contain the packed hydrophilic regions. This conformation agrees with the hydrophobic nature of the cell membrane. Additionally, the interactive image proves that the KOR is a homodimer, with two of the same macromolecules connecting at the center of the protein. [10]

The major function of the KOR, and of all OR’s, is as an analgesic, or painkiller. OR’s are also used in the treatment of diarrhea, cough, and cancer as well as their involvement in the stress and immune response physiological pathways. [9] [10] As the name may suggest, opioid receptors interact with opiates. For example, the opiate, morphine, binds to the μ opioid receptor (MOR). Misused drugs, such as heroin, follow the same chemical pathway. [11] These abused drugs have been linked to affecting many neurotransmitter systems, including ones involved with dopamine and glutamate. [12] Therefore, research must be done to combat the addictions to these drugs.

One such approach being researched to combat these addictions is to find a pathway-specific opiate receptor that can be activated without also mediating the euphoria of MOR or dysphoria of KOR responses. [10] As such a receptor has not been isolated, other options have been used. A KOR specific antagonist molecule, JDTic, forms a structure with KOR that debilitates many of KOR’s overall effects. [13] JDTic has been linked to reversing alcohol withdrawal anxiety as well as combating cocaine and morphine addictions. [13][14][15]

Research into opioid receptors is an ever growing field with new findings being published to this day. Further on, hopefully this building knowledge can lead to a pathway-specific opiate receptor that avoids addiction but still gives patients the pain relief they desire.

Overall Structure

The Kappa opioid receptor is a dimmer composed of two identical sub units. This can be seen . The extracellular side is home to the proteins primary . These two units will span the length for the cell membrane to form the basis of the receptor molecule. The each subunit is attached to the other by the I, II and VIII alpha helices. This can be seen where helices I (shown in the light blue) and helices VIII (show in the dark blue). This area will make up the basis for the intermembrane surface area. A distinguishing feature that separates the Kappa receptor from other receptors, is the large beta Hairpin,, located near the main active site of the protein. It is believed that its function is to cap the active site of the receptor. Although in general, this protein is primarily composed of alpha helices, not beta sheets (Compare to here)[2]. This evidence reinforces the idea that this protein is a transmembrane protein rather than one found inside the cytosol. In general transmembrane protein are composed almost entirely of alpha helices (or beta sheets arranged in special fashion called a beta barrel), in order to have maximum stability inside the membrane [8]. Another interesting feature of the Kappa opioid receptor is the formed by Cys131 and Cys210 which is conserved across all opioid receptors [2].

Binding Interactions

Active Site of kappa Opioid Receptors

The human kappa opioid receptor (hKOR) ligand binding pocket displays a unique combination of key characteristics both shared with and distinct from those in the chemokine and aminergic receptor families [2].

Common Ligands of Opioid Receptors

The majority of endogenous opioid peptides have a defined preference to specific subtypes, for example, endorphins act via DORs and MORs, whereas dynorphins preferentially activate KORs. Several KOR selective partial agonists and antagonists have been developed as potential antidepressants, anxiolytics, and anti-addiction medications, whereas a widely abused, naturally occurring hallucinogen Salvinorin A (SalA) was also found to be a highly selective KOR agonist. The elucidation of a large binding cavity with a multitude of potential anchoring points begins to explain both the extreme structural diversity of hKOR drugs and differences in their receptor interaction modes, as supported by differential effects of various site-directed mutations on the binding properties of chemically diverse ligands [2] [5] [7].

[See Reference 6 for list of ligands.]

Agonists Salvinorin A - Mechanisms, Structure, and Effects

Salvinorin A (SalA), a naturally occurring diterpene from the widely abused hallucinogenic plant Salvia divinorum represents an exceedingly potent and selective KOR agonist. It has been found that the 2-acetoxy moiety on SalA interacts with Cys315. SalA also displayed hydrogen bonds with binding site residues Gln115, His291, and Leu212, but it has more flexibility than JDTic [2] [4].

[See reference 7 for more information.]

Antagonists JDTic - Mechanisms, Structure, and Effects

JDTic, has exceptionally high affinity (Ki = 0.32 nM), potency, long duration of action and amore than 1000 fold selectivity for hKOR as compared to other Opioid receptor (OR) subtypes. The protonated amines in both piperidine and isoquinoline moieties of the ligand form salt bridges to the Asp 138 3.32 side chain. The piperidine amine is essential for binding. The isoquinoline nitrogen can be replaced by carbon, oxygen or sulfur atoms with only ~10 to 50 fold reduction in affinity. A “V” shaped conformation was found in the crystal structure of JDTic by itself and which showed its amino groups coordinating a water molecule. The anchoring-type interaction of two amino groups with Asp138 likely fixes the ligand in this characteristic V-shape. The distal hydroxyl groups on both the piperidine and isoquinoline moieties of JDTic when removed result in a 100 fold reduction of affinity. JDTic interacts with four residues of the binding pocket that differ in other closely related ORs, which are thought to contribute to the subtype selectivity of JDTic and other KOR-selective ligands [2] [4].

Val 108, Val 118, Ile 294 and Tyr 312

The isopropyl group from JDTic reaches deep in the orthosteric pocket to form a hydrophobic interaction with a conserved Trp 287 side chain, possibly playing a critical role in the pharmacological properties of this ligand. Analysis of the ligand-receptor interactions has revealed important molecular details responsible for the exceptionally high affinity and subtype selectivity of JDTic-a small molecule antagonist with a broad therapeutic potential [2] [5].

[See reference 2 for more information.]

Figures

Below Figure C shows potential residues on the KOR identified by molecular modeling, which might interact with Salvinorin A, and D shows a model of Salvinorin A’s interactions with the KOR [From Reference 7].

Conformation of the binding pocket with JDTic shown by sticks with yellow carbons. The protein is displayed in cartoon representation looking down from the extracellular side, with the 22 contact residues within 4.5 A ̊ from the ligand shown by white sticks. The pocket surface is shown as a semitransparent surface coloured according to binding properties (green: hydrophobic; blue: hydrogen-bond donor; red: hydrogen-bond acceptor). Salt bridges and hydrogen bonds are shown as dotted lines. Structured water molecules are shown as large magenta spheres. b, Diagram of ligand interactions in the binding pocket side chains at 4.5 A ̊ cut-off. Salt bridges are shown in red and direct hydrogen bonds in blue dashed lines. Ballesteros–Weinstein numbering is shown as superscript. Residues that vary among the m-OR, d-OR and k-OR subtypes are highlighted in cyan, and residue Asp 1383.32 implicated in k-OR-ligand binding by mutagenesis data, is highlighted orange. [From Reference 2].

Additional Features

The k-opioid receptor is a protein, with inter-membrane alpha helices displayed in red.

A hydropathy plot for this receptor reinforces this fact, with a large span of the molecule shown again as trans-membrane alpha helices.

Based on the Ramachandran plot for the general case showing the standard phi and psi angle, it can be inferred that the majority of the secondary structure is composed , with the alpha helices shown in purple and the beta sheets shown in yellow.

The large cluster of dots shown close to the origin of the plot corresponds to small angles that imply an alpha helix.

Quiz Question 1

Why might the , highlighted in blue, be located here in the protein? (Explain how its location and other properties of the protein maintain binding specificity.) What basic conformational changes may the protein undergo while binding to ligands?

Quiz Question 2

Of the labeled and highlighted , which would you predict to play a role in ligand (JDTic) binding; which would you predict to be the active site?

A. Val 118, Ala 193, Ser 310, Tyr 312; Asp 138

B. Val 108, Val 118, Tyr 312, Ile 294; Asp 138

C. Ile 294, Ala 193, Asp 138, Val 108; Tyr 312

D. Val 108, Val 118, Asp 138, Ile 294; Tyr 312

See Also

• UvrABC
• Opioid Receptor
• Mu Opioid Receptor Bound to a Morphinan Antagonist
• G protein-coupled Receptor

Credits

Introduction - Patrick Harney

Overall Structure - Matthew Long

Drug Binding Site - Brandon Kittredge

Additional Features - Jacob Kellet

Quiz Question 1 - Leah Caffrey

Quiz Question 2 - Bridget Kilkenny

References

1. Chavkin C., The Therapeutic Potential of κ-Opioids for Treatment of Pain and Addiction. Neuropsychopharmacology. 2011;36:369–370.

2. Wu H., Wacker D., Mileni M., Structure of the human kappa opioid receptor in complex with JDTic. Nature. 2012;485:327-332. PMID:22437504

3. Martinez-Mayorga K., Byler K., Yongye A., et al. Ligand/kappa-opioid Receptor Ineractions: Insights from the X-Ray Crystal Structure. Eur J. Med. Chem. 2013; 66: 114-121.

4. Leonis, Georgios, Aggelos Avramopoulos, Ramin Ekhteiari Salmas, Serdar Durdagi, Mine Yurtsever, and Manthos G. Papadopoulos. "Elucidation of Conformational States, Dynamics, and Mechanism of Binding in Human κ‐Opioid Receptor Complexes." Journal of Chemical Information and Modeling (n.d.): n. pag. ACS. Web.

5. Aldrich, Jane V., and Jay P. Mclaughlin. "Peptide Kappa Opioid Receptor Ligands: Potential for Drug Development." The AAPS Journal 11.2 (2009): 312-22. Web.

6. Henriksen, G., and F. Willoch. "Imaging of Opioid Receptors in the Central Nervous System." Brain 131.5 (2007): 1171-196. Web.

7.Roth, B. L. "Salvinorin A: A Potent Naturally Occurring Nonnitrogenous Kappa Opioid Selective Agonist." Proceedings of the National Academy

of Sciences 99.18 (2002): 11934-1939. Web.

8. Voet, D., Voet, J. G., & Pratt, C. W. (2008). Fundamentals of biochemistry: Life at the molecular level. Hoboken, NJ: Wiley.

9. Jordan, Bryen A., and Lakshmi A. Devi. "G-protein-coupled Receptor Heterodimerization Modulates Receptor Function." Nature (1999): n. pag. Web.

10. Al-Hasani, Ream, and Michael R. Bruchas. "Molecular Mechanisms of Opioid Receptor-dependent Signaling and Behavior." Anesthesiology (2011): n. pag. Web.

11. Xi, Zheng-Xiong, Scott A. Fuller, and Elliot A. Stein. "Dopamine Release in the Nucleus Accumbens during Heroin Self-Administration Is Modulated by Kappa Opioid Receptors: An In Vivo Fast-Cyclic Voltammetry Study." The Journal of Pharmacology and Experimental Therapeutics (1998): n. pag. Web.

12. Feng, Yuan, Xiaozhou He, Yilin Yang, Dongman Chao, Lawrence H. Lazarus, and Ying Xia. "Current Research on Opioid Receptor Function." Current Drug Targets 13.2 (2012): 230-46. Web.

13. Schank, Jesse R., Andrea L. Goldstein, Kelly E. Rowe, Courtney E. King, Julie A. Marusich, Jenny L. Wiley, F. Ivy Carroll, Annika Thorsell, and Markus Heilig. "The Kappa Opioid Receptor Antagonist JDTic Attenuates Alcohol Seeking and Withdrawal Anxiety." Addiction Biology 17.3 (2012): 634-47. Web.

14. Beardsley, Patrick M., James L. Howard, Keith L. Shelton, and F. Ivy Carroll. "Differential Effects of the Novel Kappa Opioid Receptor Antagonist, JDTic, on Reinstatement of Cocaine-seeking Induced by Footshock Stressors vs Cocaine Primes and Its Antidepressant-like Effects in Rats." Psycho-Pharmacology (2005): n. pag. Print.

15. Carroll, F. Ivy, Louis S. Harris, and Mario D. Aceto. "Effects of JDTic, a Selective κ-opioid Receptor Antagonist, on the Development and Expression of Physical Dependence on Morphine Using a Rat Continuous-infusion Model." European Journal of Pharmacology (2005): n. pag. Print.