Testing PDB File Sizes
From Proteopedia
Testing Computational Performance
Proteopedia recently upgraded to use Jmol capable of operating in either an HTML5/Jascript-based mode or a Java-based mode. This page is to provide information on performance that can be expected under various modes on various platforms.
At this time, users will find the best performance is provided by running Java-based Jmol.
PDBs of Increasing Size and Working Status on Various Platforms
| PDBid Page | file size from OCA | Report: Java | Report: Computer HTML5 | Report: iPad Air HTML5 |
|---|---|---|---|---|
| 3rec | 2 Kb | works | works | works |
| 1stp | 25 Kb | works | works | works |
| 2pih | 48 Kb | works | works | works |
| 3pix | 52 Kb | |||
| 1rpu | 86 Kb | works | works | works |
| 1pih | 146 Kb | |||
| 2pi8 | 235 Kb | |||
| 4ay9 | 262 Kb | works | works | works |
| 1pit (nmr) | 335 Kb | works | works | works |
| 3d2c | 354 Kb | works | works | works |
| 3tkk | 399 Kb | |||
| 1srz | 413 Kb | |||
| 3pib | 486 Kb | works | works | works |
| 2k2c (nmr) | 541 Kb | works | works | works |
| 2d2w (nmr) | 559 Kb | works | works | works |
| 2k2w (nmr) | 589 Kb | works | works | works |
| 1tkn (nmr) | 631 Kb | works | works | works |
| 2k2o (nmr) | 652 Kb | works | works | works |
| 2k2v (nmr) | 678 Kb | works | works | works |
| 2x0n | 693 Kb | works | works | works |
| 1x02 | 766 Kb | |||
| 1cx8 | 826 Kb | |||
| 1ibm LOTS OF RNA | 960 Kb | works | works in Chrome and Firefox, despite failing in Firstglance | works |
| 1d2b (nmr) | 960 Kb | works | works | works |
| 4il0 | 1105 Kb | works | works | works, even for popup |
| 2il8 (nmr) | 1192 Kb | works | works | works |
| 4iti | 1257 Kb | |||
| 4amx | 1380 Kb | works | works | works, even for popup |
| 3pif | 1410 Kb | works | works | works |
| 1m1n | 1503 Kb | works | works | works, even for popup and high quality button |
| 1yus (nmr) | 1567 Kb | works | works | works |
| 2j01 LOTS OF RNA | 1635 Kb | works | works | works, even with high quality button, but popup crashed Safari |
| 3v5i | 1715 Kb | works | works | works, even with high quality button, and popup works |
| 2vkz | 1770 Kb | works | works | works, even with high quality button, and popup works |
| 2jrc (nmr) | 1809 Kb | works | works | works, even with high quality button, but popup crashed Safari |
| 1xxe (nmr) | 1852 Kb | works | works | works, even with high quality button, but popup crashed Safari |
| 3tdk | 1853 Kb | works | works | works, even with high quality button, even popup |
| 2glj | 1874 Kb | works | works | works, even with high quality button, but popup crashed Safari |
adapted from File size Distribution of PDB entries from OCA with the addition of some additional structures.
See here for a plot based on the current table of File size Distribution of PDB entries from OCA.
