This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

User:Karsten Theis/Sandbox 3

From Proteopedia

< User:Karsten Theis

Jump to: navigation, search

Proteopedia annotated bibliography

https://www.learntechlib.org/p/35558/ Rule, G., Bajzek, D. & Kessler, A. (2010). Molecular Visualization in STEM Education: Leveraging Jmol in an Integrated Assessment Platform. In J. Sanchez & K. Zhang (Eds.), Proceedings of E-Learn 2010--World Conference on E-Learning in Corporate, Government, Healthcare, and Higher Education (pp. 304-309). Orlando, Florida, USA: Association for the Advancement of Computing in Education (AACE). Retrieved February 20, 2021 from https://www.learntechlib.org/primary/p/35558/.

Unfolding Proteins Maura C. Flannery The American Biology Teacher (2012) 74 (4): 278–281. https://doi.org/10.1525/abt.2012.74.4.13 https://online.ucpress.edu/abt/article/74/4/278/18418/Unfolding-Proteins

Rice ’n Beans or Ricin Beans? A Deadly Swap

Author(s) Ann T.S. Taylor https://sciencecases.lib.buffalo.edu/cs/files/ricin.pdf https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=847&id=847

Free Access Educational Uses of Molecular Visualization: A Survey of the Community Paul A Craig Lea V. Michel Robert C. Bateman First published: 01 April 2011 https://doi.org/10.1096/fasebj.25.1_supplement.575.1 https://faseb.onlinelibrary.wiley.com/doi/abs/10.1096/fasebj.25.1_supplement.575.1

Biochemistry/Molecular Biology Free Access Undergraduate SMART Teams: Exposing Students to the Process of Science through Physical Modeling Tim Herman Margaret Franzen Shannon Colton Marvin O'Neal First published: 01 April 2010 https://doi.org/10.1096/fasebj.24.1_supplement.16.1 https://faseb.onlinelibrary.wiley.com/doi/abs/10.1096/fasebj.24.1_supplement.16.1

Multimedia in Biochemistry and Molecular Biology Education Free Access Teaching structure: Student use of software tools for understanding macromolecular structure in an undergraduate biochemistry course Sheila S. Jaswal Patricia B. O'Hara Patrick L. Williamson Amy L. Springer First published: 10 September 2013 https://doi.org/10.1002/bmb.20718 https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20718

Improving the Student Experience of Learning and Teaching in Second Year Biochemistry: Assessment to Foster a Creative Application of Biochemical Concepts Jessica Vanderlelie International Journal of Innovation in Science and Mathematics Education, 21(4), 46-57, 2013https://openjournals.library.sydney.edu.au/index.php/CAL/article/view/7299

Known Structure, Unknown Function: An Inquiry-based Undergraduate Biochemistry Laboratory Course July 2015Biochemistry and Molecular Biology Education 43(4) DOI: 10.1002/bmb.20873 https://www.researchgate.net/profile/Linda-Columbus/publication/280092379_Gray_BAMBED_2015_SI/links/55a81b8d08ae815a04213253/Gray-BAMBED-2015-SI.pdf

Biochemistry/Molecular Biology Free Access Physical models designed to demonstrate the folding pathway of FiP35 WW domain as predicted by molecular dynamics (MD) simulations using Anton, an MD dedicated supercomputer: 2011 Pingry School S.M.A.R.T. Team Project Andrew Benton Alfano Abba E Leffler Willy Wriggers Tim Herman Alex Epifano Jack Hickey Will LaCosta Sydney Li Henry Meiring Daniell Temares … See all authors First published: 01 April 2011 https://doi.org/10.1096/fasebj.25.1_supplement.909.1 https://faseb.onlinelibrary.wiley.com/doi/abs/10.1096/fasebj.25.1_supplement.909.1

https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20805

https://www.sciencedirect.com/science/article/abs/pii/S0968000410000629

https://www.sciencedirect.com/science/article/abs/pii/S0022283618309884

https://pdfs.semanticscholar.org/6624/1c4f956bb26873386cda0a2e56bebec8be45.pdf

https://pubs.acs.org/doi/abs/10.1021/ed101022g

https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20693

https://books.google.co.uk/books?hl=en&lr=&id=aQW6BQAAQBAJ&oi=fnd&pg=PR7&dq=proteopedia&ots=wUUkVg-lq0&sig=VMNqV-Gn_RLqUpdGsbBysVeGuck#v=onepage&q=proteopedia&f=false

https://www.learntechlib.org/p/48575/

https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20769

https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20436

https://link.springer.com/chapter/10.1007/978-3-319-03919-0_42

https://academic.oup.com/bioinformatics/article/26/17/2210/198818?login=true

https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbaa003/5735620?login=true

Journal home page for Journal of Molecular Biology Review Molecular Illustration in Research and Education: Past, Present, and Future☆ David S.Goodsell Jodie Jenkinson https://www.sciencedirect.com/science/article/abs/pii/S0022283618303693

https://arxiv.org/abs/1806.08332

https://www.lifescied.org/doi/full/10.1187/cbe.13-12-0247

https://pubs.acs.org/doi/abs/10.1021/bk-2019-1337.ch002

More general citations

Most of these contain interactive 3D complements (I3DC)

Biochemistry and Molecular Biology Student Design of a Proteopedia Page to Reinforce Foundational Biochemistry Concepts and Molecular Visualization Skills Bonnie L. Hall First published: 18 April 2020 https://doi.org/10.1096/fasebj.2020.34.s1.06861 https://faseb.onlinelibrary.wiley.com/doi/abs/10.1096/fasebj.2020.34.s1.06861

Editorial Free Access Proteopedia and other exciting news Judith G. Voet Donald Voet First published: 13 September 2010 https://doi.org/10.1002/bmb.20445 Citations: 1 PDFPDF https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20445

https://febs.onlinelibrary.wiley.com/doi/full/10.1111/febs.14316

https://www.nature.com/articles/nrm2512

https://repositorium.sdum.uminho.pt/bitstream/1822/28581/1/herraez%20a_bmbed_2013%20posp.pdf

https://scripts.iucr.org/cgi-bin/paper?S0108767309099279

https://faseb.onlinelibrary.wiley.com/doi/abs/10.1096/fasebj.24.1_supplement.908.1

http://bichez.pedf.cuni.cz/archiv/article/92

https://www.tandfonline.com/doi/full/10.1080/21553769.2012.689262

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.713782

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.718526

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.759885

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.745168

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.736773

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.758056

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.712459

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.726191

Teaching foundational topics and scientific skills in biochemistry within the conceptual framework of HIV protease R. Jeremy Johnson First published: 20 March 2014 https://doi.org/10.1002/bmb.20793 https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.20793

https://scripts.iucr.org/cgi-bin/paper?rr5151

https://www.sciencedirect.com/science/article/abs/pii/S0009279719304570

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.736774

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.732340

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.712477

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.726532

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.737295

https://accessiblemeds.org/sites/default/files/2019-11/Sarah_Yim_GRxBiosims2019.pdf Slide uses image from insulin page

https://dspace.mit.edu/handle/1721.1/121878

https://www.tandfonline.com/doi/full/10.1080/07391102.2012.762722

https://www.tandfonline.com/doi/abs/10.1080/07391102.2012.721496

https://www.sciencedirect.com/science/article/abs/pii/S0167779917303074