Group:SMART:2010 Pingry SMART Team Models

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==PDB ID: 1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone==
==PDB ID: 1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone==
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<applet load='1AFS_chainA.pdb' size='400' frame='true' align='right' caption='1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone' scene='2010_Pingry_SMART_Team/1afs_default/7'/>
<applet load='1AFS_chainA.pdb' size='400' frame='true' align='right' caption='1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone' scene='2010_Pingry_SMART_Team/1afs_default/7'/>
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select all
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backbone off
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spacefill off
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cartoon off
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wireframe off
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backbone 300se
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color white
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select hetero and not water
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wireframe 250
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color cpk
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select sheet
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color [255, 128, 128]
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select 274-284 or 253-263 or 200-209 or 170-177 or 145-156 or 92-106 or 58-70 or 31-43
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color [128, 255, 255]
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select (54 or 86 or 118 or 120 or 122 or 128 or 129 or 137 or 139 or 227) and (sidechain or alpha)
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wireframe 250
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color cpk
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select (50 or 55 or 84) and (sidechain or alpha)
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wireframe 250
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color [0,255,255]
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select (28 or 224) and (sidechain or alpha)
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wireframe 250
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color [0,255,0]
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select (24 or 166 or 167 or 190 or 216 or 219 or 221 or 270 or 271 or 272 or 276) and (sidechain or alpha)
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 +
wireframe 250
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color [255,127,0]
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select 116-142 and backbone
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color [160,32,240]
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select 217-235 and backbone
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color [0,0,255]
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{{Clear}}
{{Clear}}

Revision as of 04:10, 12 March 2010

Return to 2010 SMART Team Page: 2010 Pingry SMART Team

General design guidelines

Helix color (blue): [128,255,255]

Sheet color (red): [255,128,128]

Three residues (ARG, SER, ASN; residue numbers differ by structure) that bind cofactor:

CPK the sidechain, color backbone (dark blue) [128,128,255]

Contents

AdhD K249G/H255R double mutant and Self-assembly into hydrogels

AdhD K249G/H255R double mutant

Drag the structure with the mouse to rotate

Design script:

Select all

Backbone off

Wireframe off

Spacefill off

Cartoon off

Backbone 300

Color white

Select (253-260) or (230-241) or (190-198) or (157-165) or (131-144) or (98-112) or (68-78) or (40-53)

Color [128,255,255]

Select (118-122) or (149-153) or (174-177) or (201-205) or (244-249) or (22-25) or (57-61) or (86-91)

Color [255,128,128]

Select 249 and (sidechain or alpha)

Wireframe 250

Select 249 and sidechain

Color cpk

Select 249 and alpha

Color [0,0,255]

Select 255 and (sidechain or alpha)

Wireframe 250

Select 255 and sidechain

Color cpk

Select 255 and alpha

Color [0,0,255]

PDB ID: 1a80, 2,5-diketo-d-gluconic acid reductase with NADPH (wild-type)

1a80, 2,5-diketo-d-gluconic acid reductase with NADPH (wild-type)

Drag the structure with the mouse to rotate

PDB ID: 1m9h, Mutant 2,5-diketo-d-gluconic acid reductase with NADH (mutant)

1m9h, Mutant 2,5-diketo-d-gluconic acid reductase with NADH

Drag the structure with the mouse to rotate

PDB ID: 1mi3, Xylose reductase with NAD+

1mi3, Xylose reductase with NAD+

Drag the structure with the mouse to rotate

Select all

Cartoon off

Spacefill off

Backbone 300

Color white

Select hetero and not water

Wireframe 250

Color cpk

Select 27-41 or 54-68 or 89-104 or 146-160 or 172-183 or 200-210 or 255-266 or 277-286

Color [128,255,255]

Select 20-22 or 45-47 or 77-82 or 108-113 or 163-169 or 189-193 or 213-217 or 270-271

Color [255,128,128]

Select 274-280

Color [255,255,0]

Select 225-229

Color [255,128,0]

select (275 or 276 or 280) and (sidechain or alpha)

wireframe 250

select (275 or 276 or 280) and (sidechain)

color cpk

select (275 or 276 or 280) and (alpha)

color [128,128,255]

select (274 or 227) and (sidechain or alpha)

wireframe 250

select (274 or 227) and (sidechain)

color cpk

PDB ID: 1lwi, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with NADP+ cofactor

1lwi, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with NADP+ cofactor

Drag the structure with the mouse to rotate

PDB ID: 1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone

1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone

Drag the structure with the mouse to rotate


select all

backbone off

spacefill off

cartoon off

wireframe off

backbone 300se

color white

select hetero and not water

wireframe 250

color cpk


select sheet

color [255, 128, 128]


select 274-284 or 253-263 or 200-209 or 170-177 or 145-156 or 92-106 or 58-70 or 31-43

color [128, 255, 255]


select (54 or 86 or 118 or 120 or 122 or 128 or 129 or 137 or 139 or 227) and (sidechain or alpha)

wireframe 250

color cpk

select (50 or 55 or 84) and (sidechain or alpha)

wireframe 250

color [0,255,255]

select (28 or 224) and (sidechain or alpha)

wireframe 250

color [0,255,0]

select (24 or 166 or 167 or 190 or 216 or 219 or 221 or 270 or 271 or 272 or 276) and (sidechain or alpha)

wireframe 250

color [255,127,0]

select 116-142 and backbone

color [160,32,240]

select 217-235 and backbone

color [0,0,255]



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