This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Cody Couperus/Sandbox 3
From Proteopedia
(New page: ==Cathepsin D== ==Introduction== Cathepsin D (CD) is an apartic acid protease generally found in the lysosome of cells, but is also found intracellularly, extracellularly, and in endosom...) |
|||
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | == | + | ==RNA== |
==Introduction== | ==Introduction== | ||
| - | + | -single stranded polynucleic acid | |
| - | + | -Transcribed from DNA by family of RNA polymerases | |
| - | + | -Functional roles include functional transfer for protein synthesis, catalysis, cellular regulation | |
| + | |||
| + | -Degraded by.... | ||
| + | |||
| + | ==Products of Transcription== | ||
| + | |||
| + | Names/functional roles | ||
| + | |||
| + | ==Post/Co-transcriptional modifications== | ||
| + | ==Degradation pathways== | ||
| + | ==Structure General== | ||
| + | Summary of - how to build a 3D structure from a linear medium. Practical considerations. How to think about | ||
| + | folded polymers. | ||
| + | |||
| + | Backbone | ||
| + | |||
| + | Ribose | ||
| + | |||
| + | Bases + base pairing | ||
| + | |||
| + | Forces: stacking (VDW), hydrogen bond, hydrophobic effect, electrostatic | ||
| + | |||
| + | ==Primary Structure== | ||
| + | Sequence | ||
| + | |||
| + | Maybe some statistics? | ||
| + | |||
| + | ==Structure (building blocks)== | ||
| + | Stem loop | ||
| + | |||
| + | Coaxial helices | ||
| + | |||
| + | Kink-turn | ||
| + | |||
| + | Hook-turn | ||
| + | |||
| + | Ribose zipper | ||
| + | |||
| + | Kissing loops | ||
| + | |||
| + | Hairpin loops | ||
| + | |||
| + | Pseudoknots | ||
| + | |||
| + | A-minor interactions | ||
| + | |||
| + | A-major interactions | ||
| + | |||
| + | Tetraloop-receptor motifs | ||
| + | |||
| + | T-loop motif | ||
| + | |||
| + | Triple stranded RNA | ||
| + | |||
| + | RNA quadruplex structuers | ||
| + | |||
| + | Metal chelation | ||
Current revision
Contents |
RNA
Introduction
-single stranded polynucleic acid
-Transcribed from DNA by family of RNA polymerases
-Functional roles include functional transfer for protein synthesis, catalysis, cellular regulation
-Degraded by....
Products of Transcription
Names/functional roles
Post/Co-transcriptional modifications
Degradation pathways
Structure General
Summary of - how to build a 3D structure from a linear medium. Practical considerations. How to think about folded polymers.
Backbone
Ribose
Bases + base pairing
Forces: stacking (VDW), hydrogen bond, hydrophobic effect, electrostatic
Primary Structure
Sequence
Maybe some statistics?
Structure (building blocks)
Stem loop
Coaxial helices
Kink-turn
Hook-turn
Ribose zipper
Kissing loops
Hairpin loops
Pseudoknots
A-minor interactions
A-major interactions
Tetraloop-receptor motifs
T-loop motif
Triple stranded RNA
RNA quadruplex structuers
Metal chelation
