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User:Cody Couperus/Sandbox 3
From Proteopedia
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==Introduction== | ==Introduction== | ||
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-single stranded polynucleic acid | -single stranded polynucleic acid | ||
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-Transcribed from DNA by family of RNA polymerases | -Transcribed from DNA by family of RNA polymerases | ||
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-Functional roles include functional transfer for protein synthesis, catalysis, cellular regulation | -Functional roles include functional transfer for protein synthesis, catalysis, cellular regulation | ||
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-Degraded by.... | -Degraded by.... | ||
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==Degradation pathways== | ==Degradation pathways== | ||
==Structure General== | ==Structure General== | ||
| - | Summary of - how to build a 3D structure from a linear medium. Practical considerations. How to think about folded polymers. | + | Summary of - how to build a 3D structure from a linear medium. Practical considerations. How to think about |
| + | folded polymers. | ||
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Backbone | Backbone | ||
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Ribose | Ribose | ||
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Bases + base pairing | Bases + base pairing | ||
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Forces: stacking (VDW), hydrogen bond, hydrophobic effect, electrostatic | Forces: stacking (VDW), hydrogen bond, hydrophobic effect, electrostatic | ||
==Primary Structure== | ==Primary Structure== | ||
Sequence | Sequence | ||
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Maybe some statistics? | Maybe some statistics? | ||
==Structure (building blocks)== | ==Structure (building blocks)== | ||
Stem loop | Stem loop | ||
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Coaxial helices | Coaxial helices | ||
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Kink-turn | Kink-turn | ||
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Hook-turn | Hook-turn | ||
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Ribose zipper | Ribose zipper | ||
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Kissing loops | Kissing loops | ||
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Hairpin loops | Hairpin loops | ||
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Pseudoknots | Pseudoknots | ||
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A-minor interactions | A-minor interactions | ||
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A-major interactions | A-major interactions | ||
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Tetraloop-receptor motifs | Tetraloop-receptor motifs | ||
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T-loop motif | T-loop motif | ||
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Triple stranded RNA | Triple stranded RNA | ||
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RNA quadruplex structuers | RNA quadruplex structuers | ||
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Metal chelation | Metal chelation | ||
Current revision
Contents |
RNA
Introduction
-single stranded polynucleic acid
-Transcribed from DNA by family of RNA polymerases
-Functional roles include functional transfer for protein synthesis, catalysis, cellular regulation
-Degraded by....
Products of Transcription
Names/functional roles
Post/Co-transcriptional modifications
Degradation pathways
Structure General
Summary of - how to build a 3D structure from a linear medium. Practical considerations. How to think about folded polymers.
Backbone
Ribose
Bases + base pairing
Forces: stacking (VDW), hydrogen bond, hydrophobic effect, electrostatic
Primary Structure
Sequence
Maybe some statistics?
Structure (building blocks)
Stem loop
Coaxial helices
Kink-turn
Hook-turn
Ribose zipper
Kissing loops
Hairpin loops
Pseudoknots
A-minor interactions
A-major interactions
Tetraloop-receptor motifs
T-loop motif
Triple stranded RNA
RNA quadruplex structuers
Metal chelation
