This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Ribosome 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 84: Line 84:
**[[1yj9]] - Hm50S subunit (mutant)+5S RRNA+23S RRNA <br />
**[[1yj9]] - Hm50S subunit (mutant)+5S RRNA+23S RRNA <br />
**[[1qvf]]- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix<br />
**[[1qvf]]- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix<br />
-
**[1q86]] - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin<br />
+
**[[1q86]] - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin<br />
**[[3cma]], [[3cme]], [[1vq8]], [[1vq9]], [[1m90]] - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO<br />
**[[3cma]], [[3cme]], [[1vq8]], [[1vq9]], [[1m90]] - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO<br />
**[[1vq4]], [[1vq5]], [[1vq7]], [[1vql]], [[1vqm]], [[1vqp]] – Hm50S subunit+5S RRNA+23S RRNA+transition state analog<br />
**[[1vq4]], [[1vq5]], [[1vq7]], [[1vql]], [[1vqm]], [[1vqp]] – Hm50S subunit+5S RRNA+23S RRNA+transition state analog<br />

Revision as of 08:09, 24 November 2016

Updated on 24-November-2016 For a general description of the protein see Ribosome

{{#tree:id=OrganizedByTopic|openlevels=0|

  • 30S subunit + RNA
  • 30S subunit +tRNA+mRNA
    • 3t1h, 3t1y - Tt30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA
    • 3v6u, 3v6v - Tt30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA

omal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator

    • 1xnq, 1xnr - Tt30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
    • 4gkj, 4gkk - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met
    • 4jv5, 4jya, 4k0k - Tt30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA
  • 30S subunit +A-site tRNA
    • 2uxd, 2uxc - Tt30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
    • 1n32, 1n33 - Tt30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
    • 1n34 - Tt30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
    • 1xmo, 1xmq]] - Tt30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
    • 2uxb - Tt30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
  • 30S subunit+P-site tRNA
    • 1ibk - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
    • 2om7 – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment
  • 30S subunit+A-site tRNA+P-site tRNA
    • 1ibl, 1ibm - Tt30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
  • 30S subunit+A-site tRNA+P-site tRNA+E-site tRNA
    • 1jgo, 1jgp, 1jgq - Tt30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
  • 30S subunit + antibiotics
  • 30S subunit + ribosome recycling factor
    • 3r8n, 3r8o - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA - Escherichia coli
  • 30S subunit + elongation factor
    • 4btc - Tt30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G
  • 30S subunit + translation initiation factor
    • 1hr0 - Tt30S ribosomal subunit+THX+IF+16S RRNA
    • 1i96 - Tt30S ribosomal subunit+THX+IF3+16S RRNA
  • 30S subunit + various proteins
    • 1x18 – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments
    • 2ykr - EcRPS2 + 16S RRNA + GMPPNP + GTPase RSGA
    • 4a2i - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM
    • 4adv - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM
  • 40S ribosomal subunit
    • 4v5o - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila
    • 4kzx - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM
    • 4kzy - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM
    • 4kzz - r40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM
    • 4bts - r40S ribosomal subunit+ 18SRRNA + EIF1 + EIF1A
  • 50S subunit+RNA
    • 3kni, 3knk, 3knm, 3kno, 3v6w, 3v6x, 3zne, 4k0m, 4k0q, - Tt50S subunit+5S RRNA+23S RRNA
    • 3i1n, 3i1p, - Ec50S subunit+5S RRNA+23S RRNA
    • 2zjq, 2zjr, 1nkw - Dr50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans
    • 2qa4, 3cc2, 1s72, 4v9f, 1kqs, 1qvg, 1jj2, 1ffk - Hm50S subunit+5S RRNA+23S RRNA – Haloarcula marismortui
    • 3cc7, 3cce, 3ccj, 3ccl, 3ccm, 3ccq, 3ccr, 3ccs, 3ccu, 3ccv - Hm50S subunit+5S RRNA+23S RRNA (mutant)
    • 1yj9 - Hm50S subunit (mutant)+5S RRNA+23S RRNA
    • 1qvf- Hm50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix
    • 1q86 - Hm50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin
    • 3cma, 3cme, 1vq8, 1vq9, 1m90 - Hm50S subunit+5S RRNA+23S RRNA+CCA+CCA-Phe-CAP-BIO
    • 1vq4, 1vq5, 1vq7, 1vql, 1vqm, 1vqp – Hm50S subunit+5S RRNA+23S RRNA+transition state analog
    • 1vq6, 1vqk, 1vqn – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin
    • 1vqo – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN
    • 3iy9 – 50S subunit – Leishmania taretolae
    • 2ftc – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM
    • 3j3v, 3j3w - 50S subunit+5S RRNA+23S RRNA – Bacillus subtilis
  • 50S subunit + antibiotics
  • 50S subunit + ribosome releasing factor (RRF)
    • 2rdo - Ec50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
    • 3j0d - Tt50S subunit+5S RRNA+23S RRNA+RRF – Cryo-EM
  • 50S subunit + various proteins
    • 2j28 - Ec50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM
    • 1w2b - Hm50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal
  • 60S subunit + various proteins
    • 4v8p - Tet60S subunit+ 26S RRNA+ translation initiation factor 6
    • 3izs – y60S subunit + P0 + P1 + P2 – yeast - Cryo EM
    • 4v8t – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM
    • 3o5h – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0
    • 3j39 – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM
    • 3j3b – h60S subunit + P0 + P1 + P2 – human - Cryo EM
    • 2lbf – hP1 dimerization domain + P2 dimerization domain - NMR
    • 2w1o – hP2 dimerization domain - NMR
    • 4beh – hP1 + P2 - NMR
  • 70S ribosome
    • 4v4q, 4v9d - EcRibosome
    • 4v4i, 4v83, 4v84, 4v4s, 4v4x, 4v4z, 4v90, 4v42 – TtRibosome
    • 4v8j, 4v97 – TtRibosome ram mutation
    • 4v8n – TtRibosome agmatidine mutation
    • 4v6c, 4v6d, 4v6e – EcRibosome ratcheting
    • 4v69, 4v48, 4v4a – EcRibosome – Cryo-EM
    • 4v6u – Ribosome – Pyrococcus furiosus - Cryo-EM
    • 4v4y, 4v4j – TtRibosome Shine-Dalgarno duplex
    • 4v4v – EcRibosome pre-translocational – Cryo-EM
    • 4v5m – TtRibosome pre-translocational – Cryo-EM
    • 4v5n – TtRibosome post-translocational – Cryo-EM
    • 4v4w – EcRibosome SecM-stalled – Cryo-EM
    • 4v65 – EcRibosome pre-accomodation – Cryo-EM
    • 4v66 – EcRibosome post-accomodation – Cryo-EM
    • 4v61 – sRibosome – spinach - Cryo-EM
    • 4v8m - TbRibosome – Trypanosoma brucei – Cryo-EM
  • 70S ribosome complex with mRNA
  • 70S ribosome complex with antibiotic
  • 70S ribosome complex with release factor
    • 4v5a – TtRibosome + RRF
    • 4v63, 4v7p – TtRibosome + RF-1
    • 4v5e, 4v4r, 4v67, 4v9n – TtRibosome + RF-2
    • 4v5j – TtRibosome + RF-2 + substrate analog
    • 1ml5 – EcRibosome + RF-2 – Cryo-EM
    • 4v89 – EcRibosome + RF-3
    • 4v85 – EcRibosome + RF-3 + mRNA + antibiotic
    • 4v8o – TtRibosome + RF-3
  • 70S ribosome complex with various proteins
    • 4v5b – EcRibosome + PDF-binding helix
    • 4v5h – EcRibosome + Tnac leader peptide
    • 4v5k – TtRibosome + colicin E3
    • 4v6v - EcRibosome+ tetracycline resistance protein + mRNA + P-tRNA – Cryo-EM
    • 4v7j, 4v7k – TtRibosome + toxin RelE
    • 4v6m – EcRibosome + SecYE – Cryo-EM
    • 4v4g – EcRibosome + protein Y – Cryo-EM
    • 4v7i – EcRibosome +preprotein translocase – Cryo-EM
    • 4v49 - EcRibosome +general stress protein Ctc – Cryo-EM
    • 4v8g, 4v8h – TtRibosome + modulation factor
    • 4v8i - TtRibosome + ribosome-associated inhibitor
    • 4v95 – TtRibosome + YAEJ
  • 70S ribosome complex with elongation factor
    • 4v5f, 4v8u, 4v9h – TtRibosome + elongation factor G
    • 4v9o – EcRibosome + elongation factor G
    • 4v9p – EcRibosome + antibiotic + elongation factor G
    • 4v47 – EcRibosome + elongation factor G – Cryo-EM
    • 4v6t – EcRibosome + elongation factor G + tRNA-SmpB – Cryo-EM
    • [[4v56a] – TtRibosome + elongation factor P
    • 4v6k, 4v6l – EcRibosome + elongation factor Tu
    • 4v5l – EcRibosome + elongation factor Tu + tRNA
    • 4v5g – TtRibosome + elongation factor Tu
    • 4v8q – TtRibosome + antibiotic + elongation factor Tu
    • 4v68 – TtRibosome + antibiotic + elongation factor Tu – Cryo-EM
    • 4v5p, 4v5q, 4v5r, 4v5s – TtRibosome + elongation factor Tu + tRNA-Trp
    • 4v9j, 4v9k, 4v9l, 4v9m – TtRibosome + elongation factor G + tRNA
    • 4v9l – TtRibosome + elongation factor G + antibiotic + tRNA
  • 80S ribosome
    • 4v6w - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Drosophila melanogaster – Cryo-EM
    • 4v7r, 4v88 – yRibosome
    • 4v6i – yRibosome - Cryo-EM
    • 4v4b – yRibosome + elongation factor 2 + antifungal - Cryo-EM
    • 4v7e – Ribosome – wheat - Cryo-EM
    • 4v6x – Ribosome – human - Cryo-EM
    • 4v5z - dRibosome – Cryo-EM
    • 3j0l, 3j0o, 3j0p, 3j0q - rRibosome+ mRNA – Cryo-EM
    • 4v7h - TlRibosome+P-site tRNA – Thermomyces lanuginosus
  • Mitochondrial ribosome (mitoribosome)
    • 5aj4 - p28S small and 39S large subunit of the mammalian mitoribosome in a 55S complex - pig
    • 4v19, 4v1a- p39S large subunit of the mammalian mitoribosome
    • 5aj3 - p28S small subunit of the mammalian mitoribosome
    • 4ce4 - p39S large subunit of the mammalian mitoribosome
    • 3j6b - y54S large subunit of the mitoribosome
    • 3j6v - 28S small subunit of the mammalian mitoribosome - bovine

}}

Retrieved from "http://52.214.119.220/wiki/index.php/Ribosome_3D_structures"
Personal tools