User:Karsten Theis/Sandbox 2

Some advanced topics are discussed in [[Proteopedia:Cookbook]], e.g. integrated quizzes (for details, see [[Help:Quiz]]), how to construct a URL showing a specific scene, and inserting interactive buttons (for details, see [[Jmol/Interactivity]]). For more help on using Jmol to achieve advanced representations in 3D scenes, see the pages listed under [[Special:Allpages/Jmol]]. To use other entries as examples for your own pages, go to those pages and choose the tab "edit this page" to see the source code. Sometimes, templates [https://proteopedia.org/wiki/index.php?title=Special%3AAllpages&from=Abstract&namespace=10] and [Proteopedia:Macros|macros] can help to achieve effects with less typing. If you encounter error messages, consult [[Help:Errors]] or contact the Proteopedia team.

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===<div class="bg-yellow">Software for use with Proteopedia</div>===

*[[Java]] can be used to improve performance of molecular scenes in Proteopedia. Please see [[Installing and enabling Java]].

*Java may be a security risk. Please see [[Java#How_to_be_as_safe_as_possible_with_Java|How to be as safe as possible with Java]].

[[Image:1ijw-150px-48c.gif|right]]

*Any molecule that you see in Proteopedia can be explored further using [[FirstGlance in Jmol]]. Every page titled with a [[PDB identification code]] has a link to explore that model in [[FirstGlance]].

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*You can make presentation-ready animations that can be dropped into Powerpoint slides from any scene in Proteopedia or FirstGlance. See [[Help:Making animations for Powerpoint]]. (At right: [[1ijw]])

===<div class="bg-yellow">Interactive 3D "Supplementary Materials" for Journal Publications</div>===

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===<div class="bg-yellow">Protecting Pages</div>===

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===<div class="bg-yellow">Languages</div>===

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* See also [[Help:Text Directionality|Text Directionality]] regarding right-to-left languages such as Arabic or Hebrew.

===Proteopedia Speed===

* Proteopedia will '''render faster''' in your computer if you enable the use of Java (see above).

* '''Create fast pages''': Following these [[Create_fast_pages|simple tips]] your Proteopedia pages might load and render faster.

*

*[[Biological Unit: Showing]]

*[[Proteopedia:Rotating vs still models]]

===Comments===

Users of Proteopedia are invited to comment on published structures. Comments can raise questions about the interpretation, validity or quality of the model, cite other pertinent resources, congratulate the authors on a job well done, discuss implications of the model, etc.

'''How to comment on articles or published structures:'''

Log in to Proteopedia and add your comment by editing the '''discussion''' tab associated with each page. You can comment on any page in Proteopedia. <!--After you save your comments, a banner will appear automatically at the top of the page to alert people to the existence of comments.-->

* [[Proteopedia:Comments_on_Published_Structures|Published Structures with Comments]]

* [[Proteopedia:Comments_on_Articles|Articles with Comments]]

===Errors===

See [[Help:Errors]] for guidelines on how to proceed when your page seems gone forever.

==Contact==

Feel free to [[Special:Contact|contact us]] with any questions or suggestions.

====Proteopedia Speed====

* '''Render faster''': If you have Java available on your computer, molecular models in Proteopedia pages will be rendered faster:

** If you are a registered user you can set the use of Java as a default, in one of the preferences in your personal profile. (Visit the <code>my preferences</code> link at top-right.)

** To use Java occasionally on a one-page basis, add <code>?use=java</code> to the page URL, like this: [http://proteopedia.org/w/G_protein-coupled_receptor?use=java http://proteopedia.org/w/G_protein-coupled_receptor?use=java].

** For a complete description see [[Using_Java_for_Rendering_Structures|Using Java for Rendering Structures]].

==Your Heading Here (maybe something like 'Structure')==

<StructureSection load='4ins' size='340' side='right' caption='Caption for this structure' scene=''>

<scene name='60/609965/B_surface/1'>Chain a as cartoon, chain b as surface</scene>

<jmol>

source http://proteopedia.org/wiki/scripts/Green_Fluorescent_Protein/1ema_gfp_barrel/2.spt

</jmol>

</StructureSection>