User:Karsten Theis/Animation course

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Here is the SARS-2 <scene name='82/824516/Spike/1'>spike protein</scene>.
Here is the SARS-2 <scene name='82/824516/Spike/1'>spike protein</scene>.
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<jmol><jmolLink><script>delete not *:A; connect (912-985) (not 912-985) DELETE; select 912-985; set picking dragselected; set allowrotateselected; temp0 = {912-985}.xyz.all</script><text>click to prepare</text></jmolLink></jmol>
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<jmol><jmolLink><script>delete not *:A; connect (912-985) (not 912-985) DELETE; model 1; select 912-985 and model 1; set picking dragselected; set allowrotateselected; temp0 = {(912-985) and model 1}.xyz.all</script><text>click to prepare</text></jmolLink></jmol>
Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below:
Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below:
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<jmol><jmolLink><script>temp1 = {912-985}.xyz.all</script><text>store state 1</text></jmolLink></jmol>
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<jmol><jmolLink><script>temp1 = {(912-985) and model 1}.xyz.all</script><text>store state 1</text></jmolLink></jmol>
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<jmol><jmolLink><script>temp2 = {912-985}.xyz.all</script><text>store state 2</text></jmolLink></jmol>
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<jmol><jmolLink><script>temp2 = {(912-985) and model 1}.xyz.all</script><text>store state 2</text></jmolLink></jmol>
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<jmol><jmolLink><script>temp3 = {912-985}.xyz.all</script><text>store state 3</text></jmolLink></jmol>
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<jmol><jmolLink><script>temp3 = {(912-985) and model 1}.xyz.all</script><text>store state 3</text></jmolLink></jmol>
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<jmol><jmolLink><script>temp4 = {912-985}.xyz.all</script><text>store state 4</text></jmolLink></jmol>
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<jmol><jmolLink><script>temp4 = {(912-985) and model 1}.xyz.all</script><text>store state 4</text></jmolLink></jmol>
===Recall ligand position===
===Recall ligand position===
Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket):
Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket):
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<jmol><jmolLink><script>ROTATE COMPARE {912-985} @{temp0} -2</script><text>retrieve state 0</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {(912-985) and model 1} @{temp0} -2</script><text>retrieve state 0</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {912-985} @{temp1} -2</script><text>retrieve state 1</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {(912-985) and model 1} @{temp1} -2</script><text>retrieve state 1</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {912-985} @{temp2} -2</script><text>retrieve state 2</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {(912-985) and model 1} @{temp2} -2</script><text>retrieve state 2</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {912-985} @{temp3} -2</script><text>retrieve state 3</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {(912-985) and model 1} @{temp3} -2</script><text>retrieve state 3</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {912-985} @{temp4} -2</script><text>retrieve state 4</text></jmolLink></jmol>
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<jmol><jmolLink><script>ROTATE COMPARE {(912-985) and model 1} @{temp4} -2</script><text>retrieve state 4</text></jmolLink></jmol>
To animate, click below
To animate, click below

Revision as of 13:43, 5 March 2021

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis

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