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2voy

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{{Seed}}
 
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[[Image:2voy.jpg|left|200px]]
 
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==CryoEM model of CopA, the copper transporting ATPase from Archaeoglobus fulgidus==
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The line below this paragraph, containing "STRUCTURE_2voy", creates the "Structure Box" on the page.
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<SX load='2voy' size='340' side='right' viewer='molstar' caption='[[2voy]], [[Resolution|resolution]] 18.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2voy]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835], [https://en.wikipedia.org/wiki/Arcfl Arcfl] and [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VOY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VOY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Copper-exporting_ATPase Copper-exporting ATPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.4 3.6.3.4] </span></td></tr>
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{{STRUCTURE_2voy| PDB=2voy | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2voy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2voy OCA], [https://pdbe.org/2voy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2voy RCSB], [https://www.ebi.ac.uk/pdbsum/2voy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2voy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/COPA_ARCFU COPA_ARCFU]] Probably involved in copper and silver export.<ref>PMID:11756450</ref> [[https://www.uniprot.org/uniprot/AT2A1_RABIT AT2A1_RABIT]] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction (By similarity). [[https://www.uniprot.org/uniprot/COPA_BACSU COPA_BACSU]] Involved in copper export.<ref>PMID:12644235</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vo/2voy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2voy ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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P-type ATPases play an important role in Cu homeostasis, which provides sufficient Cu for metalloenzyme biosynthesis but prevents oxidative damage of free Cu to the cell. The P(IB) group of P-type ATPases includes ATP-dependent pumps of Cu and other transition metal ions, and it is distinguished from other family members by the presence of N-terminal metal-binding domains (MBD). We have determined structures of two constructs of a Cu pump from Archaeoglobus fulgidus (CopA) by cryoelectron microscopy of tubular crystals, which reveal the overall architecture and domain organization of the molecule. By comparing these structures, we localized its N-terminal MBD within the cytoplasmic domains that use ATP hydrolysis to drive the transport cycle. We have built a pseudoatomic model by fitting existing crystallographic structures into the cryoelectron microscopy maps for CopA, which suggest a Cu-dependent regulatory role for the MBD.
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===CRYOEM MODEL OF COPA, THE COPPER TRANSPORTING ATPASE FROM ARCHAEOGLOBUS FULGIDUS===
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Structure of a copper pump suggests a regulatory role for its metal-binding domain.,Wu CC, Rice WJ, Stokes DL Structure. 2008 Jun;16(6):976-85. PMID:18547529<ref>PMID:18547529</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<!--
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18547529}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2voy" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18547529 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18547529}}
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__TOC__
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</SX>
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==About this Structure==
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[[Category: Vibrio subtilis ehrenberg 1835]]
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2VOY is a 12 chains structure of sequences from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus], [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VOY OCA].
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[[Category: Arcfl]]
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==Reference==
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<ref group="xtra">PMID:18547529</ref><references group="xtra"/>
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[[Category: Archaeoglobus fulgidus]]
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[[Category: Bacillus subtilis]]
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[[Category: Copper-exporting ATPase]]
[[Category: Copper-exporting ATPase]]
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[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
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[[Category: Rice, W J.]]
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[[Category: Rice, W J]]
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[[Category: Stokes, D L.]]
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[[Category: Stokes, D L]]
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[[Category: Wu, C C.]]
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[[Category: Wu, C C]]
[[Category: Copper transporter]]
[[Category: Copper transporter]]
[[Category: Cryo-em]]
[[Category: Cryo-em]]
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[[Category: Membrane protein]]
[[Category: Membrane protein]]
[[Category: Metal binding domain]]
[[Category: Metal binding domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 27 15:13:36 2009''
 

Current revision

CryoEM model of CopA, the copper transporting ATPase from Archaeoglobus fulgidus

2voy, resolution 18.00Å

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