This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5cnr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5cnr" [edit=sysop:move=sysop])
Current revision (08:39, 27 September 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5cnr is ON HOLD
+
==Crystal structure-guided design of self-assembling RNA nano triangles==
 +
<StructureSection load='5cnr' size='340' side='right'caption='[[5cnr]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5cnr]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Senecavirus_A Senecavirus A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CNR FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.59&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cnr OCA], [https://pdbe.org/5cnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cnr RCSB], [https://www.ebi.ac.uk/pdbsum/5cnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cnr ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
RNA nanotechnology uses RNA structural motifs to build nanosized architectures that assemble through selective base-pair interactions. Herein, we report the crystal-structure-guided design of highly stable RNA nanotriangles that self-assemble cooperatively from short oligonucleotides. The crystal structure of an 81 nucleotide nanotriangle determined at 2.6 A resolution reveals the so-far smallest circularly closed nanoobject made entirely of double-stranded RNA. The assembly of the nanotriangle architecture involved RNA corner motifs that were derived from ligand-responsive RNA switches, which offer the opportunity to control self-assembly and dissociation.
-
Authors: Boerneke, M., Dibrov, S., Hermann, T.
+
Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.,Boerneke MA, Dibrov SM, Hermann T Angew Chem Int Ed Engl. 2016 Feb 23. doi: 10.1002/anie.201600233. PMID:26914842<ref>PMID:26914842</ref>
-
Description: Crystal structure-guided design of self-assembling RNA nano triangles
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Boerneke, M]]
+
<div class="pdbe-citations 5cnr" style="background-color:#fffaf0;"></div>
-
[[Category: Hermann, T]]
+
== References ==
-
[[Category: Dibrov, S]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Senecavirus A]]
 +
[[Category: Boerneke M]]
 +
[[Category: Dibrov S]]
 +
[[Category: Hermann T]]

Current revision

Crystal structure-guided design of self-assembling RNA nano triangles

PDB ID 5cnr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools