This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.




2mr3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:01, 1 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Large structure}}
+
 
==A subunit of 26S proteasome lid complex==
==A subunit of 26S proteasome lid complex==
-
<StructureSection load='2mr3' size='340' side='right' caption='[[2mr3]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2mr3' size='340' side='right'caption='[[2mr3]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2mr3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MR3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MR3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2mr3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MR3 FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2mqw|2mqw]], [[2mqx|2mqx]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RPN9, NAS7, YDR427W, D9461.14 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mr3 OCA], [https://pdbe.org/2mr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mr3 RCSB], [https://www.ebi.ac.uk/pdbsum/2mr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mr3 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mr3 OCA], [http://pdbe.org/2mr3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mr3 RCSB], [http://www.ebi.ac.uk/pdbsum/2mr3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mr3 ProSAT]</span></td></tr>
+
</table>
</table>
-
{{Large structure}}
 
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RPN9_YEAST RPN9_YEAST]] Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
+
[https://www.uniprot.org/uniprot/RPN9_YEAST RPN9_YEAST] Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
The regulatory particle (RP) of the 26 S proteasome functions in preparing polyubiquitinated substrates for degradation. The lid complex of the RP contains an Rpn8-Rpn11 heterodimer surrounded by a horseshoe-shaped scaffold formed by six proteasome-COP9/CSN-initiation factor (PCI)-containing subunits. The PCI domains are essential for lid assembly, whereas the detailed molecular mechanisms remain elusive. Recent cryo-EM studies at near-atomic resolution provided invaluable information on the RP architecture in different functional states. Nevertheless, atomic resolution structural information on the RP is still limited, and deeper understanding of RP assembly mechanism requires further studies on the structures and interactions of individual subunits or subcomplexes. Herein we report the high-resolution NMR structures of the PCI-containing subunit Rpn9 from Saccharomyces cerevisiae. The 45-kDa protein contains an all-helical N-terminal domain and a C-terminal PCI domain linked via a semiflexible hinge. The N-terminal domain mediates interaction with the ubiquitin receptor Rpn10, whereas the PCI domain mediates interaction with the neighboring PCI subunit Rpn5. The Rpn9-Rpn5 interface highlights two structural motifs on the winged helix module forming a hydrophobic center surrounded by ionic pairs, which is a common pattern for all PCI-PCI interactions in the lid. The results suggest that divergence in surface composition among different PCI pairs may contribute to the modulation of lid assembly.
+
-
 
+
-
Solution structure of yeast Rpn9: insights into proteasome lid assembly.,Hu Y, Wu Y, Li Q, Zhang W, Jin C J Biol Chem. 2015 Mar 13;290(11):6878-89. doi: 10.1074/jbc.M114.626762. Epub 2015, Jan 28. PMID:25631053<ref>PMID:25631053</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 2mr3" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
-
*[[Proteasome|Proteasome]]
+
*[[Proteasome 3D structures|Proteasome 3D structures]]
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Baker's yeast]]
+
[[Category: Large Structures]]
-
[[Category: Hu, Y]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Jin, C]]
+
[[Category: Hu Y]]
-
[[Category: Wu, Y]]
+
[[Category: Jin C]]
-
[[Category: Hydrolase]]
+
[[Category: Wu Y]]

Current revision

A subunit of 26S proteasome lid complex

PDB ID 2mr3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2mr3"
Personal tools