2fhg

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[[Image:2fhg.png|left|200px]]
 
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==Crystal Structure of Mycobacterial Tuberculosis Proteasome==
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The line below this paragraph, containing "STRUCTURE_2fhg", creates the "Structure Box" on the page.
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<StructureSection load='2fhg' size='340' side='right'caption='[[2fhg]], [[Resolution|resolution]] 3.23&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2fhg]] is a 28 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FHG FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.23&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fhg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhg OCA], [https://pdbe.org/2fhg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fhg RCSB], [https://www.ebi.ac.uk/pdbsum/2fhg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fhg ProSAT]</span></td></tr>
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{{STRUCTURE_2fhg| PDB=2fhg | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PSA_MYCTU PSA_MYCTU] Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. The M.tuberculosis proteasome is able to cleave oligopeptides not only after hydrophobic but also after basic, acidic and small neutral residues. Among the identified substrates of the M.tuberculosis proteasome are the pupylated FabD, PanB and Mpa proteins. One function of the proteasome is to contribute to M.tuberculosis ability to resist killing by host macrophages, since the core proteasome is essential for persistence of the pathogen during the chronic phase of infection in mice. The mechanism of protection against bactericidal chemistries of the host's immune response probably involves the degradation of proteins that are irreversibly oxidized, nitrated, or nitrosated.<ref>PMID:16468985</ref> <ref>PMID:18059281</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fh/2fhg_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fhg ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mycobacterium tuberculosis (Mtb) has the remarkable ability to resist killing by human macrophages. The 750 kDa proteasome, not available in most eubacteria except Actinomycetes, appears to contribute to Mtb's resistance. The crystal structure of the Mtb proteasome at 3.0 A resolution reveals a substrate-binding pocket with composite features of the distinct beta1, beta2 and beta5 substrate binding sites of eukaryotic proteasomes, accounting for the broad specificity of the Mtb proteasome towards oligopeptides described in the companion article [Lin et al. (2006), Mol Microbiol doi:10.1111/j.1365-2958.2005.05035.x]. The substrate entrance at the end of the cylindrical proteasome appears open in the crystal structure due to partial disorder of the alpha-subunit N-terminal residues. However, cryo-electron microscopy of the core particle reveals a closed end, compatible with the density observed in negative-staining electron microscopy that depended on the presence of the N-terminal octapetides of the alpha-subunits in the companion article, suggesting that the Mtb proteasome has a gated structure. We determine for the first time the proteasomal inhibition mechanism of the dipeptidyl boronate N-(4-morpholine)carbonyl-beta-(1-naphthyl)-L-alanine-L-leucine boronic acid (MLN-273), an analogue of the antimyeloma drug bortezomib. The structure improves prospects for designing Mtb-specific proteasomal inhibitors as a novel approach to chemotherapy of tuberculosis.
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===Crystal Structure of Mycobacterial Tuberculosis Proteasome===
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Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate.,Hu G, Lin G, Wang M, Dick L, Xu RM, Nathan C, Li H Mol Microbiol. 2006 Mar;59(5):1417-28. PMID:16468986<ref>PMID:16468986</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_16468986}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2fhg" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 16468986 is the PubMed ID number.
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{{ABSTRACT_PUBMED_16468986}}
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==About this Structure==
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[[2fhg]] is a 28 chain structure of [[Proteasome]] with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHG OCA].
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==See Also==
==See Also==
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*[[Proteasome]]
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*[[Proteasome 3D structures|Proteasome 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:16468986</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
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[[Category: Dick, L.]]
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[[Category: Dick L]]
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[[Category: Hu, G.]]
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[[Category: Hu G]]
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[[Category: Li, H.]]
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[[Category: Li H]]
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[[Category: Lin, G.]]
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[[Category: Lin G]]
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[[Category: Nathan, C.]]
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[[Category: Nathan C]]
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[[Category: Wang, M.]]
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[[Category: Wang M]]
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[[Category: Xu, R M.]]
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[[Category: Xu RM]]
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[[Category: Hydrolase]]
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[[Category: Multi-protein]]
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[[Category: Multi-subunit complex]]
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[[Category: Protease]]
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[[Category: Proteasome]]
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Current revision

Crystal Structure of Mycobacterial Tuberculosis Proteasome

PDB ID 2fhg

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