2bgy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2bgy" [edit=sysop:move=sysop])
Current revision (09:15, 9 May 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2bgy.png|left|200px]]
 
-
<!--
+
==Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus.==
-
The line below this paragraph, containing "STRUCTURE_2bgy", creates the "Structure Box" on the page.
+
<SX load='2bgy' size='340' side='right' viewer='molstar' caption='[[2bgy]], [[Resolution|resolution]] 20.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2bgy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BGY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 20&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgy OCA], [https://pdbe.org/2bgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bgy RCSB], [https://www.ebi.ac.uk/pdbsum/2bgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bgy ProSAT]</span></td></tr>
-
{{STRUCTURE_2bgy| PDB=2bgy | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FLGE_SALTY FLGE_SALTY]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/2bgy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bgy ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The axial proteins of the bacterial flagellum function as a drive shaft, universal joint, and propeller driven by the flagellar rotary motor; they also form the putative protein export channel. The N- and C-terminal sequences of the eight axial proteins were predicted to form interlocking alpha-domains generating an axial tube. We report on an approximately 1-nm resolution map of the hook from Salmonella typhimurium, which reveals such a tube made from interdigitated, 1-nm rod-like densities similar to those seen in maps of the filament. Atomic models for the two outer domains of the hook subunit were docked into the corresponding outermost features of the map. The N and C termini of the hook subunit fragment are positioned next to each other and face toward the axis of the hook. The placement of these termini would permit the residues missing in the fragment to form the rod-like features that form the core domain of the hook. We also fit the hook atomic model to an approximately 2-nm resolution map of the hook from Caulobacter crescentus. The hook protein sequence from C. crescentus is largely homologous to that of S. typhimurium except for a large insertion (20 kDa). According to difference maps and our fitting, this insertion is found on the outer surface of the hook, consistent with our modeling of the hook.
-
===FIT OF THE X-RAY STRUCUTRE OF THE BATERIAL FLAGELLAR HOOK FRAGMENT FLGE31 INTO AN EM MAP FROM THE HOOK OF CAULOBACTER CRESCENTUS.===
+
A partial atomic structure for the flagellar hook of Salmonella typhimurium.,Shaikh TR, Thomas DR, Chen JZ, Samatey FA, Matsunami H, Imada K, Namba K, Derosier DJ Proc Natl Acad Sci U S A. 2005 Jan 25;102(4):1023-8. Epub 2005 Jan 18. PMID:15657146<ref>PMID:15657146</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2bgy" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_15657146}}, adds the Publication Abstract to the page
+
*[[Flagellar protein 3D structures|Flagellar protein 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15657146 is the PubMed ID number.
+
*[[The Bacterial Flagellar Hook|The Bacterial Flagellar Hook]]
-
-->
+
== References ==
-
{{ABSTRACT_PUBMED_15657146}}
+
<references/>
-
 
+
__TOC__
-
==About this Structure==
+
</SX>
-
[[2bgy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGY OCA].
+
[[Category: Large Structures]]
-
 
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
==Reference==
+
[[Category: Chen JZ]]
-
<ref group="xtra">PMID:15657146</ref><ref group="xtra">PMID:15510139</ref><references group="xtra"/>
+
[[Category: DeRosier DJ]]
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+
[[Category: Imada K]]
-
[[Category: Chen, J Z.]]
+
[[Category: Matsunami H]]
-
[[Category: Derosier, D J.]]
+
[[Category: Namba K]]
-
[[Category: Imada, K.]]
+
[[Category: Samatey FA]]
-
[[Category: Matsunami, H.]]
+
[[Category: Shaikh TR]]
-
[[Category: Namba, K.]]
+
[[Category: Thomas DR]]
-
[[Category: Samatey, F A.]]
+
-
[[Category: Shaikh, T R.]]
+
-
[[Category: Thomas, D R.]]
+
-
[[Category: Bacterial motility]]
+
-
[[Category: Flagellar hook]]
+
-
[[Category: Flagellum]]
+
-
[[Category: Motor protein]]
+

Current revision

Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus.

2bgy, resolution 20.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools