4d8p

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[[Image:4d8p.jpg|left|200px]]
 
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==Structural and functional studies of the trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) molecule==
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The line below this paragraph, containing "STRUCTURE_4d8p", creates the "Structure Box" on the page.
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<StructureSection load='4d8p' size='340' side='right'caption='[[4d8p]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[4d8p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D8P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D8P FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_4d8p| PDB=4d8p | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d8p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d8p OCA], [https://pdbe.org/4d8p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d8p RCSB], [https://www.ebi.ac.uk/pdbsum/4d8p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d8p ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/L8E864_HUMAN L8E864_HUMAN]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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MHC class II molecules are composed of one alpha-chain and one beta-chain whose membrane distal interface forms the peptide binding groove. Most of the existing knowledge on MHC class II molecules comes from the cis-encoded variants where the alpha- and beta-chain are encoded on the same chromosome. However, trans-encoded class II MHC molecules, where the alpha- and beta-chain are encoded on opposite chromosomes, can also be expressed. We have studied the trans-encoded class II HLA molecule DQ2.3 (DQA1*03:01/DQB1*02:01) that has received particular attention as it may explain the increased risk of certain individuals to type 1 diabetes. We report the X-ray crystal structure of this HLA molecule complexed with a gluten epitope at 3.05 A resolution. The gluten epitope is preferentially recognized in context of the DQ2.3 molecule by T-cell clones of a DQ8/DQ2.5 heterozygous celiac disease patient. This preferential recognition can be explained by improved HLA binding as the epitope combines the peptide binding motif of DQ2.5 (negative charge at P4) and DQ8 (negative charge at P1). The analysis of the structure of DQ2.3 together with all other available DQ crystal structures and sequences led us to categorize DQA1 and DQB1 genes into two groups where any alpha-chain and beta-chain belonging to the same group are expected to form a stable heterodimer.
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===Structural and functional studies of the trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) molecule===
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Structural and functional studies of the trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) molecule.,Tollefsen S, Hotta K, Chen X, Simonsen B, Swaminathan K, Mathews II, Sollid LM, Kim CY J Biol Chem. 2012 Feb 23. PMID:22362761<ref>PMID:22362761</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4d8p" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Gluten|Gluten]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22362761 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22362761}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[4d8p]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Triticum_aestivum,_synthetic,_homo_sapiens Triticum aestivum, synthetic, homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D8P OCA].
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==Reference==
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<ref group="xtra">PMID:022362761</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Triticum aestivum, synthetic, homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Chen, X.]]
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[[Category: Triticum aestivum]]
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[[Category: Hotta, K.]]
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[[Category: Chen X]]
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[[Category: Kim, C Y.]]
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[[Category: Hotta K]]
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[[Category: Mathews, I I.]]
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[[Category: Kim C-Y]]
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[[Category: Class ii mhc]]
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[[Category: Mathews II]]
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[[Category: Immune system]]
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Current revision

Structural and functional studies of the trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) molecule

PDB ID 4d8p

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