Distinguishing the modes of Jmol on Proteopedia
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| - | Jmol is the primary visualization software used in Proteopedia. Jmol is a [http://en.wikipedia.org/wiki/Cross-platform cross-platform] program written in [[Java]], but able to run in an HTML/Javascript-mode that does not require [[Java]]. The HTML/Javascript mode is presently the default on Proteopedia as it runs on more platforms. | + | [[Jmol]] is the primary visualization software used in Proteopedia. Jmol is a [http://en.wikipedia.org/wiki/Cross-platform cross-platform] program written in [[Java]], but able to run in an HTML/Javascript-mode that does not require [[Java]]. The HTML/Javascript mode is presently the default on Proteopedia as it runs on more platforms. |
| - | '''At this time, Jmol still performs best in Java mode and users are encouraged to use that on Proteoepdia.''' See [[Using Java for Rendering Structures|here]] for how to opt in to Java mode. | + | '''At this time, Jmol still performs best in Java mode and users are encouraged to use that on Proteoepdia.''' See [[Using Java for Rendering Structures|here]] for how to opt in to Java mode. See [[Testing PDB File Sizes|here]] for the benchmark comparisons. |
| - | You can easily distinguish which mode Jmol is presently running in by looking in the bottom right corner. You'll see <font color="maroon">Jmol_S</font> in the bottom right corner of the Proteopedia structure scene windows when Jmol is running with the signed Java applet. You'll see <font color="gold">JSmol</font> in the bottom right corner of structure windows when Jmol is operating in HTML/Javascript mode. | + | You can easily distinguish which mode [[Jmol]] is presently running in by looking in the bottom right corner. You'll see <font color="maroon">Jmol_S</font> in the bottom right corner of the Proteopedia structure scene windows when Jmol is running with the signed Java applet. You'll see <font color="gold">JSmol</font> in the bottom right corner of structure windows when Jmol is operating in HTML/Javascript mode. |
{| | {| | ||
| [[Image:Making image with JSmol shown for vs Jmol S.png|left|400px]] | | [[Image:Making image with JSmol shown for vs Jmol S.png|left|400px]] | ||
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| [[Image:Making image with Jmol S shown for vs JSmol.png|left|400px]] | | [[Image:Making image with Jmol S shown for vs JSmol.png|left|400px]] | ||
|} | |} | ||
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| + | ==See also== | ||
| + | *[[Jmol]] | ||
| + | *[[Java]] | ||
| + | *[[Using Java for Rendering Structures]] | ||
| + | *[[Testing PDB File Sizes]] | ||
Current revision
Jmol is the primary visualization software used in Proteopedia. Jmol is a cross-platform program written in Java, but able to run in an HTML/Javascript-mode that does not require Java. The HTML/Javascript mode is presently the default on Proteopedia as it runs on more platforms.
At this time, Jmol still performs best in Java mode and users are encouraged to use that on Proteoepdia. See here for how to opt in to Java mode. See here for the benchmark comparisons.
You can easily distinguish which mode Jmol is presently running in by looking in the bottom right corner. You'll see Jmol_S in the bottom right corner of the Proteopedia structure scene windows when Jmol is running with the signed Java applet. You'll see JSmol in the bottom right corner of structure windows when Jmol is operating in HTML/Javascript mode.
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